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MS012004 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012004
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold640:39127..39822
RNA-Seq ExpressionMS012004
SyntenyMS012004
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA32948.1 PREDICTED: DUF4283 domain-containing [Prunus dulcis]9.1e-3936.82Show/hide
Query:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD
        +++++  E   + +E+E  ++ +    I+D G+RL +SL GK+L+    +    K T++  W       V+ IG N FLF F    DR R+L++GPW FD
Subjt:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD

Query:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGG-CWIPI
        K+L++LE+P   + PS +      FW+   ++PL+CM+  +   +GN+ GR  +V    DG   G  L +R+S+D+SKPLRRG K+ +  P G   ++  
Subjt:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGG-CWIPI

Query:  QYERLPDFCYNCGKLDHVIK
        +YERLP+FC+ CG+L HV K
Subjt:  QYERLPDFCYNCGKLDHVIK

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.1e-7662.78Show/hide
Query:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW
        A+ +LL++W++FKLTSEE++ +VDI+  A+E TGK L+LSL  KLLSK+ IS TV+KNTL  +WKLD  +F+V+ IG N FLF+F RSSDRNRIL+ GPW
Subjt:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW

Query:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI
         FD++LII+++P SL KP  + F  VS WVHFFDL LACMN TMA  LGNAIG FE+V  +++ + WGS L VR+  D+ KPL RGIKLN+DGPMGGCWI
Subjt:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI

Query:  PIQYERLPDFCYNCGKLDHVIKN
        PIQYERLPDF Y+CG+LDH++K+
Subjt:  PIQYERLPDFCYNCGKLDHVIKN

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]5.3e-7155.11Show/hide
Query:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD
        E+LL  W+ FKLTSEE+E ++D+++ A++   + L  SL GKLL+K+ IS+ V+   L+ +WK++H   VE+IG+N FLFHF R  D NR+++TGPW FD
Subjt:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD

Query:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPIQ
        K+LI+L+ P S    S L FN+V+FW+H FDLP++ +N TMA  LGNAIG F +V C+  G+ WG+SL +R+ +DI+KPLRRGIK+NIDGPMGGCWIPIQ
Subjt:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPIQ

Query:  YERLPDFCYNCGKLDHVIKNYDSIY
        YERLPDFCY CG + H   + D+ Y
Subjt:  YERLPDFCYNCGKLDHVIKNYDSIY

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.2e-6857.21Show/hide
Query:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW
        A+ DLL++W++FKLTSEEEET++D++  A   TG RL+  L GKL  K+PI+  V+KNT+ T+WKL+ ++F V+++G N FLF F R+ DRN+I ++GPW
Subjt:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW

Query:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI
         FD++L+++  P +L+ PS L F K+  WV FFDLPL C+   MA  LGNA+G FE   CD     WGS+L VR+ LDISKPLRRGIKLN+DGP+GG WI
Subjt:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI

Query:  PIQYERLPDFCYNCG
        PIQYERLPDFCY+CG
Subjt:  PIQYERLPDFCYNCG

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]3.1e-3937.83Show/hide
Query:  SEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLF
        ++ LLD   +  LTSEE+   V I   +      + D+ L GKLL+++P +   +KNTL++ W+      V  IG N F+F F    D+ R+L  GPW F
Subjt:  SEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLF

Query:  DKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPI
        DK L++L      V+PS +   +V FWVH  +LPL  MN  +  I+GNA+G+F ++  +  G  WG ++ +R++LD+ KPLRRG+KL +       W+  
Subjt:  DKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPI

Query:  QYERLPDFCYNCGKLDHVIKNYDSIYSGKE
        +YERLP +CY CG+L H  +  D   S  +
Subjt:  QYERLPDFCYNCGKLDHVIKNYDSIYSGKE

TrEMBL top hitse value%identityAlignment
A0A5E4G034 PREDICTED: DUF4283 domain-containing4.4e-3936.82Show/hide
Query:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD
        +++++  E   + +E+E  ++ +    I+D G+RL +SL GK+L+    +    K T++  W       V+ IG N FLF F    DR R+L++GPW FD
Subjt:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD

Query:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGG-CWIPI
        K+L++LE+P   + PS +      FW+   ++PL+CM+  +   +GN+ GR  +V    DG   G  L +R+S+D+SKPLRRG K+ +  P G   ++  
Subjt:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGG-CWIPI

Query:  QYERLPDFCYNCGKLDHVIK
        +YERLP+FC+ CG+L HV K
Subjt:  QYERLPDFCYNCGKLDHVIK

A0A6J1BSZ1 uncharacterized protein LOC1110054815.3e-7762.78Show/hide
Query:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW
        A+ +LL++W++FKLTSEE++ +VDI+  A+E TGK L+LSL  KLLSK+ IS TV+KNTL  +WKLD  +F+V+ IG N FLF+F RSSDRNRIL+ GPW
Subjt:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW

Query:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI
         FD++LII+++P SL KP  + F  VS WVHFFDL LACMN TMA  LGNAIG FE+V  +++ + WGS L VR+  D+ KPL RGIKLN+DGPMGGCWI
Subjt:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI

Query:  PIQYERLPDFCYNCGKLDHVIKN
        PIQYERLPDF Y+CG+LDH++K+
Subjt:  PIQYERLPDFCYNCGKLDHVIKN

A0A6J1D765 uncharacterized protein LOC1110179025.8e-3938.71Show/hide
Query:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD
        +++ D WE FK T++E ET V I+      T   + L +  KL + + IS+  I++ + + W++ +S   E +G N ++  FK  S+++R+L +GPW F+
Subjt:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD

Query:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKL-NIDGPMGGCWIPI
        KSL++L SP++  +P  + FN  +FW+   ++P  C++  MA ILG  +G  E +  D    + G  + VR+ +D+SKPLRRGIKL N DG     W P+
Subjt:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKL-NIDGPMGGCWIPI

Query:  QYERLPDFCYNCGKLDH
        +YE+LPDFCY CGK+ H
Subjt:  QYERLPDFCYNCGKLDH

A0A6J1DU55 uncharacterized protein LOC1110231352.6e-7155.11Show/hide
Query:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD
        E+LL  W+ FKLTSEE+E ++D+++ A++   + L  SL GKLL+K+ IS+ V+   L+ +WK++H   VE+IG+N FLFHF R  D NR+++TGPW FD
Subjt:  EDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFD

Query:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPIQ
        K+LI+L+ P S    S L FN+V+FW+H FDLP++ +N TMA  LGNAIG F +V C+  G+ WG+SL +R+ +DI+KPLRRGIK+NIDGPMGGCWIPIQ
Subjt:  KSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPIQ

Query:  YERLPDFCYNCGKLDHVIKNYDSIY
        YERLPDFCY CG + H   + D+ Y
Subjt:  YERLPDFCYNCGKLDHVIKNYDSIY

A0A6J1DX30 uncharacterized protein LOC1110248743.5e-6857.21Show/hide
Query:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW
        A+ DLL++W++FKLTSEEEET++D++  A   TG RL+  L GKL  K+PI+  V+KNT+ T+WKL+ ++F V+++G N FLF F R+ DRN+I ++GPW
Subjt:  ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLD-HSFAVETIGRNTFLFHFKRSSDRNRILQTGPW

Query:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI
         FD++L+++  P +L+ PS L F K+  WV FFDLPL C+   MA  LGNA+G FE   CD     WGS+L VR+ LDISKPLRRGIKLN+DGP+GG WI
Subjt:  LFDKSLIILESPSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWI

Query:  PIQYERLPDFCYNCG
        PIQYERLPDFCY+CG
Subjt:  PIQYERLPDFCYNCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATCAGAGGACTTGTTGGATAAATGGGAAAGTTTCAAGTTGACATCCGAGGAGGAGGAAACTTCAGTGGACATTAACATCTTGGCAATTGAAGATACCGGGAAGAGGCT
TGATCTAAGCCTCGCTGGGAAGCTTCTCTCTAAGCAACCCATTTCATCCACCGTTATCAAGAACACTTTGGTGACTTCTTGGAAGCTAGATCATTCTTTTGCGGTGGAAA
CCATAGGAAGGAATACTTTTCTTTTCCATTTCAAAAGATCCTCTGATCGGAACCGAATTCTCCAAACGGGACCATGGTTGTTTGATAAGTCTTTAATCATATTGGAATCC
CCTTCCTCCCTTGTTAAGCCCTCATATTTACCCTTCAATAAGGTCTCATTCTGGGTCCATTTCTTTGACCTACCTCTAGCATGTATGAATAATACAATGGCTCCGATCTT
GGGCAATGCTATCGGCCGGTTTGAAAATGTTGCTTGTGATTCAGATGGGTACTATTGGGGGTCTAGTCTCTGTGTTCGTATTTCTCTTGATATCTCAAAGCCTCTACGAC
GTGGTATCAAACTGAACATAGATGGCCCCATGGGTGGCTGCTGGATTCCAATTCAATATGAACGGCTTCCGGACTTCTGCTATAATTGTGGGAAACTTGATCACGTTATC
AAGAATTATGACTCCATTTATTCTGGCAAGGAAATG
mRNA sequenceShow/hide mRNA sequence
GCATCAGAGGACTTGTTGGATAAATGGGAAAGTTTCAAGTTGACATCCGAGGAGGAGGAAACTTCAGTGGACATTAACATCTTGGCAATTGAAGATACCGGGAAGAGGCT
TGATCTAAGCCTCGCTGGGAAGCTTCTCTCTAAGCAACCCATTTCATCCACCGTTATCAAGAACACTTTGGTGACTTCTTGGAAGCTAGATCATTCTTTTGCGGTGGAAA
CCATAGGAAGGAATACTTTTCTTTTCCATTTCAAAAGATCCTCTGATCGGAACCGAATTCTCCAAACGGGACCATGGTTGTTTGATAAGTCTTTAATCATATTGGAATCC
CCTTCCTCCCTTGTTAAGCCCTCATATTTACCCTTCAATAAGGTCTCATTCTGGGTCCATTTCTTTGACCTACCTCTAGCATGTATGAATAATACAATGGCTCCGATCTT
GGGCAATGCTATCGGCCGGTTTGAAAATGTTGCTTGTGATTCAGATGGGTACTATTGGGGGTCTAGTCTCTGTGTTCGTATTTCTCTTGATATCTCAAAGCCTCTACGAC
GTGGTATCAAACTGAACATAGATGGCCCCATGGGTGGCTGCTGGATTCCAATTCAATATGAACGGCTTCCGGACTTCTGCTATAATTGTGGGAAACTTGATCACGTTATC
AAGAATTATGACTCCATTTATTCTGGCAAGGAAATG
Protein sequenceShow/hide protein sequence
ASEDLLDKWESFKLTSEEEETSVDINILAIEDTGKRLDLSLAGKLLSKQPISSTVIKNTLVTSWKLDHSFAVETIGRNTFLFHFKRSSDRNRILQTGPWLFDKSLIILES
PSSLVKPSYLPFNKVSFWVHFFDLPLACMNNTMAPILGNAIGRFENVACDSDGYYWGSSLCVRISLDISKPLRRGIKLNIDGPMGGCWIPIQYERLPDFCYNCGKLDHVI
KNYDSIYSGKEM