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MS012041 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012041
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationscaffold54:32489..32911
RNA-Seq ExpressionMS012041
SyntenyMS012041
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]7.0e-2656.34Show/hide
Query:  MDRNLIVSEMET----MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+ T     KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEMET----MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]1.7e-2456.94Show/hide
Query:  MDRNLIVSEM-ETMKKE---TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE
        MDR+L+VSE+  TMKK    TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRNLIVSEM-ETMKKE---TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE

Query:  ASLDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV
          L         +DDFL S YES E++L R+ +MENF   S S+
Subjt:  ASLDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]8.2e-6798.58Show/hide
Query:  MDRNLIVSEMETMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
        MDRNLIVSEME MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
Subjt:  MDRNLIVSEMETMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM

Query:  EDSNDDFLESPYESFEEMLMRETLMENFAVPSRSVESSGLV
        EDSNDDFLESPYESFEEMLMRE LMENFAVPSRSVESSGLV
Subjt:  EDSNDDFLESPYESFEEMLMRETLMENFAVPSRSVESSGLV

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]6.0e-1752.42Show/hide
Query:  MDRNLIVSEMETMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MDRNLIVSEMETMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT

Query:  TMEDSNDDFLESPYESFEEMLMRE
         MEDS+D FL   YES E + MR+
Subjt:  TMEDSNDDFLESPYESFEEMLMRE

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]3.5e-1750.39Show/hide
Query:  MDRNLIVSEMETMKKE-TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDV--
        M+ +L+  ++E  +KE  RKRK   +KNQPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA +FP       AS++  E N+ K ++ DDD++  L +  
Subjt:  MDRNLIVSEMETMKKE-TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDV--

Query:  -ATTMEDSNDDFLESPYESFEEMLMRE
         A  MEDS+DDFL   YES E + MR+
Subjt:  -ATTMEDSNDDFLESPYESFEEMLMRE

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein8.4e-2556.94Show/hide
Query:  MDRNLIVSEM-ETMKKE---TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE
        MDR+L+VSE+  TMKK    TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRNLIVSEM-ETMKKE---TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE

Query:  ASLDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV
          L         +DDFL S YES E++L R+ +MENF   S S+
Subjt:  ASLDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV

A0A1S3B8H6 uncharacterized protein LOC1034871673.4e-2656.34Show/hide
Query:  MDRNLIVSEMET----MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+ T     KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEMET----MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV

A0A5D3DPQ4 Sigma factor binding protein 23.4e-2656.34Show/hide
Query:  MDRNLIVSEMET----MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+ T     KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEMET----MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMRETLMENFAVPSRSV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like4.0e-6798.58Show/hide
Query:  MDRNLIVSEMETMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
        MDRNLIVSEME MKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
Subjt:  MDRNLIVSEMETMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM

Query:  EDSNDDFLESPYESFEEMLMRETLMENFAVPSRSVESSGLV
        EDSNDDFLESPYESFEEMLMRE LMENFAVPSRSVESSGLV
Subjt:  EDSNDDFLESPYESFEEMLMRETLMENFAVPSRSVESSGLV

A0A6J1FKR4 uncharacterized protein LOC1114466392.9e-1752.42Show/hide
Query:  MDRNLIVSEMETMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MDRNLIVSEMETMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT

Query:  TMEDSNDDFLESPYESFEEMLMRE
         MEDS+D FL   YES E + MR+
Subjt:  TMEDSNDDFLESPYESFEEMLMRE

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.0e-0740.7Show/hide
Query:  LIVSEMETMKKETR----KRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE
        L++++ ++    TR    +++ S   ++P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     ++D+      EMNLE
Subjt:  LIVSEMETMKKETR----KRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.8e-0850.82Show/hide
Query:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID
        +K  +++K +   N+P+KV YISNPMRV T AS+FR LVQELTG+DA    P   +  S D
Subjt:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.4e-0840.7Show/hide
Query:  LIVSEMETMKKETR----KRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE
        L++++ ++    TR    +++ S   ++P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     ++D+      EMNLE
Subjt:  LIVSEMETMKKETR----KRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE

AT3G56710.1 sigma factor binding protein 11.3e-0950.82Show/hide
Query:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID
        +K  +++K +   N+P+KV YISNPMRV T AS+FR LVQELTG+DA    P   +  S D
Subjt:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAAATCTAATTGTGAGCGAGATGGAGACGATGAAGAAAGAAACTCGAAAACGAAAATTGTCTGTTCAGAAGAACCAACCCTTAAAAGTTGTCTACATATCGAA
CCCTATGAGGGTCCACACTAGCGCGTCTGAATTTAGAGCCTTGGTCCAAGAACTCACTGGTCGAGATGCCGAGTTCCCTGACCCGGCTAAGTTTCATCAGGCCTCGATTG
ATGTTGGGGAAATGAATCTCGAGAAGAATCGGGAAGGTGATGATGATGAGGAAGCGTCCCTTGATGTGGCCACTACAATGGAGGATTCGAATGACGACTTTCTTGAGAGT
CCATACGAGAGTTTTGAAGAGATGTTGATGAGGGAGACGCTGATGGAGAACTTTGCAGTCCCTTCTAGATCTGTTGAATCTTCTGGTTTAGTC
mRNA sequenceShow/hide mRNA sequence
ATGGATCGAAATCTAATTGTGAGCGAGATGGAGACGATGAAGAAAGAAACTCGAAAACGAAAATTGTCTGTTCAGAAGAACCAACCCTTAAAAGTTGTCTACATATCGAA
CCCTATGAGGGTCCACACTAGCGCGTCTGAATTTAGAGCCTTGGTCCAAGAACTCACTGGTCGAGATGCCGAGTTCCCTGACCCGGCTAAGTTTCATCAGGCCTCGATTG
ATGTTGGGGAAATGAATCTCGAGAAGAATCGGGAAGGTGATGATGATGAGGAAGCGTCCCTTGATGTGGCCACTACAATGGAGGATTCGAATGACGACTTTCTTGAGAGT
CCATACGAGAGTTTTGAAGAGATGTTGATGAGGGAGACGCTGATGGAGAACTTTGCAGTCCCTTCTAGATCTGTTGAATCTTCTGGTTTAGTC
Protein sequenceShow/hide protein sequence
MDRNLIVSEMETMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTMEDSNDDFLES
PYESFEEMLMRETLMENFAVPSRSVESSGLV