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MS012053 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012053
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a-like isoform X2
Genome locationscaffold54:183723..184243
RNA-Seq ExpressionMS012053
SyntenyMS012053
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596167.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2956.8Show/hide
Query:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ
        Q+I Q   Q HE+L  Q L  RQ+H+Q+ MH+QSCVRPQNTL +PCRP G QSR  G ++PP+MF  H +V+NLQPNENL AQ+KEEV+ ED   S F+ 
Subjt:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ

Query:  PHHTPRGPNTLIEQHKQHQSMGVSA
         H+      + IEQHKQHQS+G SA
Subjt:  PHHTPRGPNTLIEQHKQHQSMGVSA

XP_022147805.1 probable mediator of RNA polymerase II transcription subunit 15c isoform X1 [Momordica charantia]4.9e-6998.52Show/hide
Query:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
        QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQ HQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
Subjt:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG

Query:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA
        EDVQASKFVQPHHTPRGPNT+IEQHKQHQSMGVSA
Subjt:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA

XP_022147806.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Momordica charantia]4.9e-6998.52Show/hide
Query:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
        QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQ HQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
Subjt:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG

Query:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA
        EDVQASKFVQPHHTPRGPNT+IEQHKQHQSMGVSA
Subjt:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA

XP_022971183.1 mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucurbita maxima]3.8e-2956.8Show/hide
Query:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ
        Q+I Q   Q HE+L  Q L  RQ+HQQ+ MH+QSCV+PQN L +PCRP G QSR  G ++PP+MF  H +V+NLQPNENL AQ+KEEVI ED   S F+ 
Subjt:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ

Query:  PHHTPRGPNTLIEQHKQHQSMGVSA
         H+      + IEQHKQHQS+G SA
Subjt:  PHHTPRGPNTLIEQHKQHQSMGVSA

XP_023539395.1 uncharacterized protein LOC111800051 isoform X1 [Cucurbita pepo subsp. pepo]3.5e-3058.4Show/hide
Query:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ
        Q+I Q   Q HE+L  Q L  RQ+HQQ+ MH+QSCVRPQNTL +PCRP G QSR  G ++PP+MF  H +V+NLQPNENL AQ+KEEVI ED   S F+ 
Subjt:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ

Query:  PHHTPRGPNTLIEQHKQHQSMGVSA
         H+      + IEQHKQHQS+G SA
Subjt:  PHHTPRGPNTLIEQHKQHQSMGVSA

TrEMBL top hitse value%identityAlignment
A0A6J1D158 probable mediator of RNA polymerase II transcription subunit 15c isoform X12.4e-6998.52Show/hide
Query:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
        QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQ HQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
Subjt:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG

Query:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA
        EDVQASKFVQPHHTPRGPNT+IEQHKQHQSMGVSA
Subjt:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA

A0A6J1D3G7 mediator of RNA polymerase II transcription subunit 15a-like isoform X22.4e-6998.52Show/hide
Query:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
        QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQ HQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
Subjt:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG

Query:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA
        EDVQASKFVQPHHTPRGPNT+IEQHKQHQSMGVSA
Subjt:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA

A0A6J1EZU5 mediator of RNA polymerase II transcription subunit 15a isoform X32.4e-2956.8Show/hide
Query:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ
        Q+I Q   Q HE+L  Q L  RQ+HQQ+ MH+QSCVRPQNTL +PCRP G QSR  G ++PP+MF  H +V+NLQPNENL AQ+KEEVI ED   S F+ 
Subjt:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ

Query:  PHHTPRGPNTLIEQHKQHQSMGVSA
         ++      + IEQHKQHQ++G SA
Subjt:  PHHTPRGPNTLIEQHKQHQSMGVSA

A0A6J1I7U8 mediator of RNA polymerase II transcription subunit 15a isoform X11.8e-2956.8Show/hide
Query:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ
        Q+I Q   Q HE+L  Q L  RQ+HQQ+ MH+QSCV+PQN L +PCRP G QSR  G ++PP+MF  H +V+NLQPNENL AQ+KEEVI ED   S F+ 
Subjt:  QNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ

Query:  PHHTPRGPNTLIEQHKQHQSMGVSA
         H+      + IEQHKQHQS+G SA
Subjt:  PHHTPRGPNTLIEQHKQHQSMGVSA

A0A6J1J6S4 uncharacterized protein LOC1114822711.6e-2556.3Show/hide
Query:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG
        Q A PN LL+Q+  QL P+ H QLQRQ LN RQ+HQQ GMH+QS V PQN L SPC P GL S          +F  +  V+NLQPNENL  Q+KE VIG
Subjt:  QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIG

Query:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA
        E   ASK V   H P      IEQHKQHQSMG SA
Subjt:  EDVQASKFVQPHHTPRGPNTLIEQHKQHQSMGVSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCTGGCAGCCCCTAATCCTCTTTTGCGGCAAAATATTATGCAGTTAACACCACAGTCGCATGAACAACTACAAAGACAAAATCTGAATGCCAGACAGTCGCATCAACA
ATTTGGGATGCACAGTCAAAGTTGTGTTCGTCCACAAAATACATTGATTTCACCATGTCGACCACTGGGTTTGCAGAGTCGAGATTCTGGAGTTTATATACCCCCACAAA
TGTTCCCACCACATTCAGAAGTTATGAACTTGCAGCCCAATGAGAATTTAAGAGCCCAAATAAAAGAGGAAGTAATAGGTGAAGATGTGCAGGCCTCAAAATTCGTACAA
CCACACCATACGCCTCGAGGTCCCAACACTCTGATTGAGCAACATAAGCAACACCAGTCCATGGGAGTTTCTGCA
mRNA sequenceShow/hide mRNA sequence
CAGCTGGCAGCCCCTAATCCTCTTTTGCGGCAAAATATTATGCAGTTAACACCACAGTCGCATGAACAACTACAAAGACAAAATCTGAATGCCAGACAGTCGCATCAACA
ATTTGGGATGCACAGTCAAAGTTGTGTTCGTCCACAAAATACATTGATTTCACCATGTCGACCACTGGGTTTGCAGAGTCGAGATTCTGGAGTTTATATACCCCCACAAA
TGTTCCCACCACATTCAGAAGTTATGAACTTGCAGCCCAATGAGAATTTAAGAGCCCAAATAAAAGAGGAAGTAATAGGTGAAGATGTGCAGGCCTCAAAATTCGTACAA
CCACACCATACGCCTCGAGGTCCCAACACTCTGATTGAGCAACATAAGCAACACCAGTCCATGGGAGTTTCTGCA
Protein sequenceShow/hide protein sequence
QLAAPNPLLRQNIMQLTPQSHEQLQRQNLNARQSHQQFGMHSQSCVRPQNTLISPCRPLGLQSRDSGVYIPPQMFPPHSEVMNLQPNENLRAQIKEEVIGEDVQASKFVQ
PHHTPRGPNTLIEQHKQHQSMGVSA