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MS012057 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012057
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold54:227643..227929
RNA-Seq ExpressionMS012057
SyntenyMS012057
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]8.9e-1755.32Show/hide
Query:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS
        NICNL+S+RLDS+NF L +    +IL+A+ L+G IDGT PCP R   S+ T   ST+    NP Y  W+A+DQAL+T+IN TLSP  L+YVVGS
Subjt:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS

KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-1757.29Show/hide
Query:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT
        NICNLV IRLDS+N+ L   +  SIL+A+ LFGHID T+PCP + L S+ T G++   + +NP+Y QW++RDQALITLIN TLS   L++VVGS T
Subjt:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-1757.29Show/hide
Query:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT
        NICNLV IRLDS+N+ L   +  SIL+A+ LFGHID T+PCP + L S+ T G++   + +NP Y QW++RDQALITLIN TLS   L++VVGS T
Subjt:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]8.9e-1755.32Show/hide
Query:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS
        NICNL+S+RLDS+NF L +    +IL+A+ L+G IDGT PCP R   S+ T   ST+    NP Y  W+A+DQAL+T+IN TLSP  L+YVVGS
Subjt:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]8.9e-1755.32Show/hide
Query:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS
        NICNL+S+RLDS+NF L +    +IL+A+ L+G IDGT PCP R   S+ T   ST+    NP Y  W+A+DQAL+T+IN TLSP  L+YVVGS
Subjt:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X24.3e-1755.32Show/hide
Query:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS
        NICNL+S+RLDS+NF L +    +IL+A+ L+G IDGT PCP R   S+ T   ST+    NP Y  W+A+DQAL+T+IN TLSP  L+YVVGS
Subjt:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X14.3e-1755.32Show/hide
Query:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS
        NICNL+S+RLDS+NF L +    +IL+A+ L+G IDGT PCP R   S+ T   ST+    NP Y  W+A+DQAL+T+IN TLSP  L+YVVGS
Subjt:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS

A0A5A7UTE5 Putative mitochondrial protein6.6e-1857.29Show/hide
Query:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT
        NICNLV IRLDS+N+ L   +  SIL+A+ LFGHID T+PCP + L S+ T G++   + +NP+Y QW++RDQALITLIN TLS   L++VVGS T
Subjt:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT

A0A5D3BEU0 Putative mitochondrial protein1.1e-1757.29Show/hide
Query:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT
        NICNLV IRLDS+N+ L   +  SIL+A+ LFGHID T+PCP + L S+ T G++   + +NP Y QW++RDQALITLIN TLS   L++VVGS T
Subjt:  NICNLVSIRLDSSNFTL--RRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT

A0A5D3CLI6 T4.54.3e-1755.32Show/hide
Query:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS
        NICNL+S+RLDS+NF L +    +IL+A+ L+G IDGT PCP R   S+ T   ST+    NP Y  W+A+DQAL+T+IN TLSP  L+YVVGS
Subjt:  NICNLVSIRLDSSNFTLRR--SFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACATTTGCAACCTCGTTTCAATTCGCTTAGATTCTTCAAATTTCACTCTTAGAAGGTCTTTTTCGATTCTCCGTGCATACTTTCTATTCGGCCACATCGACGGTACTAT
TCCCTGCCCCGATCGTCTTCTTCAATCAACGGACACATATGGCTCTTCTACAATACTTGCTTTGGTTAATCCTAGGTATACACAATGGGTAGCCCGAGACCAAGCCCTAA
TTACTCTGATAAATGTGACATTATCGCCCATCGTTCTCTCCTATGTCGTCGGATCTCAAACC
mRNA sequenceShow/hide mRNA sequence
AACATTTGCAACCTCGTTTCAATTCGCTTAGATTCTTCAAATTTCACTCTTAGAAGGTCTTTTTCGATTCTCCGTGCATACTTTCTATTCGGCCACATCGACGGTACTAT
TCCCTGCCCCGATCGTCTTCTTCAATCAACGGACACATATGGCTCTTCTACAATACTTGCTTTGGTTAATCCTAGGTATACACAATGGGTAGCCCGAGACCAAGCCCTAA
TTACTCTGATAAATGTGACATTATCGCCCATCGTTCTCTCCTATGTCGTCGGATCTCAAACC
Protein sequenceShow/hide protein sequence
NICNLVSIRLDSSNFTLRRSFSILRAYFLFGHIDGTIPCPDRLLQSTDTYGSSTILALVNPRYTQWVARDQALITLINVTLSPIVLSYVVGSQT