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MS012079 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012079
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein SKIP17-like
Genome locationscaffold708:134538..134678
RNA-Seq ExpressionMS012079
SyntenyMS012079
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575912.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]4.4e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

XP_022954019.1 F-box protein SKIP17-like isoform X1 [Cucurbita moschata]4.4e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

XP_022954022.1 F-box protein At4g02733-like isoform X2 [Cucurbita moschata]4.4e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

XP_022992515.1 F-box protein At4g02733-like isoform X2 [Cucurbita maxima]4.4e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

XP_038898344.1 F-box protein SKIP17-like [Benincasa hispida]4.4e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

TrEMBL top hitse value%identityAlignment
A0A6J1D800 F-box protein SKIP17-like2.2e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

A0A6J1GPQ3 F-box protein SKIP17-like isoform X12.2e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

A0A6J1GPV7 F-box protein At4g02733-like isoform X22.2e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

A0A6J1JVX0 F-box protein At4g02733-like isoform X22.2e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

A0A6J1JZF4 F-box protein SKIP17-like isoform X12.2e-0974.47Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        M+ + SLCYATATCS+ FHKCAMDPS YAN+DLTT + RVNN VVST
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

SwissProt top hitse value%identityAlignment
Q9SY03 F-box protein At4g027607.6e-0451.11Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV
        M+ + SL  A+A C++ F+KCAMD   Y+++DLTT A  V+NGVV
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV

Arabidopsis top hitse value%identityAlignment
AT4G02740.1 F-box/RNI-like superfamily protein1.2e-0455.56Show/hide
Query:  ATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST
        A C   F+KCAMD   Y+++DLTT AR  + GVVST
Subjt:  ATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST

AT4G02760.1 RNI-like superfamily protein5.4e-0551.11Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV
        M+ + SL  A+A C++ F+KCAMD   Y+++DLTT A  V+NGVV
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV

AT4G02760.2 RNI-like superfamily protein5.4e-0551.11Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV
        M+ + SL  A+A C++ F+KCAMD   Y+++DLTT A  V+NGVV
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV

AT4G02760.3 RNI-like superfamily protein5.4e-0551.11Show/hide
Query:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV
        M+ + SL  A+A C++ F+KCAMD   Y+++DLTT A  V+NGVV
Subjt:  MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTTCACATAGCCTTTGCTATGCTACAGCTACTTGTTCAATATGTTTTCACAAGTGTGCAATGGACCCTTCTGGCTATGCCAACGTCGACTTAACAACATGTGC
TCGTAGAGTTAATAATGGAGTGGTGTCTACA
mRNA sequenceShow/hide mRNA sequence
ATGATGATTTCACATAGCCTTTGCTATGCTACAGCTACTTGTTCAATATGTTTTCACAAGTGTGCAATGGACCCTTCTGGCTATGCCAACGTCGACTTAACAACATGTGC
TCGTAGAGTTAATAATGGAGTGGTGTCTACA
Protein sequenceShow/hide protein sequence
MMISHSLCYATATCSICFHKCAMDPSGYANVDLTTCARRVNNGVVST