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MS012093 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012093
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription factor UPBEAT1
Genome locationscaffold708:234417..234659
RNA-Seq ExpressionMS012093
SyntenyMS012093
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3436561.1 hypothetical protein FNV43_RR23653 [Rhamnella rubrinervis]3.0e-0548.61Show/hide
Query:  RSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE
        R R++GIE+RV TL+ LVPN N++         ++GL  LF  TADYIL LQ RVR+MQ ++ VLS + S++
Subjt:  RSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]7.9e-0652.38Show/hide
Query:  RRRSR------RRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPS
        RRR R      ++ R  S+ I +RV+TLR+LVPNMNN+N    +  +   L+ LFT TADYIL LQTRVR M+TL+ VLS S S
Subjt:  RRRSR------RRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPS

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]9.1e-1061.9Show/hide
Query:  RRRS----RRRRRSRSS-GIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN
        RRRS     ++RRSRSS  IE+RVSTLR+LVPNMNNNN  N H++    L+ LFT TADYIL LQTRVR M+ L+ VLSAS ++
Subjt:  RRRS----RRRRRSRSS-GIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]9.1e-1061.9Show/hide
Query:  RRRS----RRRRRSRSS-GIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN
        RRRS     ++RRSRSS  IE+RVSTLR+LVPNMNNNN  N H++    L+ LFT TADYIL LQTRVR M+ L+ VLSAS ++
Subjt:  RRRS----RRRRRSRSS-GIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]1.0e-0856.25Show/hide
Query:  IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN
        +++RSRR   S SS IE+RV+TLRSLVPN +N+N  +  ++    L+ LFT TADYIL LQTRVRLM+TL+ VLS   S+
Subjt:  IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN

TrEMBL top hitse value%identityAlignment
A0A0A0K6D9 Uncharacterized protein4.8e-0956.25Show/hide
Query:  IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN
        +++RSRR   S SS IE+RV+TLRSLVPN +N+N  +  ++    L+ LFT TADYIL LQTRVRLM+TL+ VLS   S+
Subjt:  IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN

A0A444XT61 Uncharacterized protein8.0e-0444.3Show/hide
Query:  RRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE
        RRSR R    ++GI+ RV TL++L+PN +NN          +GL  LF  TA+YIL LQ RVR+MQ ++ VL+ S  ++
Subjt:  RRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE

A0A445BD20 Uncharacterized protein8.0e-0444.3Show/hide
Query:  RRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE
        RRSR R    ++GI+ RV TL++L+PN +NN          +GL  LF  TA+YIL LQ RVR+MQ ++ VL+ S  ++
Subjt:  RRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE

A0A5A7TXU1 Transcription factor UPBEAT12.5e-0552.44Show/hide
Query:  IRRRSRRRRRSRS--SGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN
        +++RSRR   S S  S IE+RV+ LR+LVPN N+N+  +    +   L+ LFT TADYIL LQTRVRLM+TL+ VLS   S+
Subjt:  IRRRSRRRRRSRS--SGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAA
TTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCT
TGTCTGCTTCTCCTTCCAATGAG
mRNA sequenceShow/hide mRNA sequence
ATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAA
TTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCT
TGTCTGCTTCTCCTTCCAATGAG
Protein sequenceShow/hide protein sequence
IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE