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MS012118 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012118
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationscaffold708:433126..433316
RNA-Seq ExpressionMS012118
SyntenyMS012118
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4151942.1 hypothetical protein ERO13_D04G093064v2 [Gossypium hirsutum]1.3e-1164.41Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ
        T+ S  RNGA+D QVKFNPQ NLIY QHRC KG +AKG I    R G HK LYH IDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ

RYR78391.1 hypothetical protein Ahy_A01g003179 [Arachis hypogaea]2.2e-1160.32Show/hide
Query:  IFKLTNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        +F  T+  S RNGA+D QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  IFKLTNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

TYI87047.1 hypothetical protein E1A91_D04G108700v1 [Gossypium mustelinum]3.4e-1266.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ
        T+ S  RNGA+D QVKFNPQ NLIY QHRC KG +AKG I    R G HKRLYH IDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ

YP_009449931.1 ribosomal protein L2 [Burmannia coelestis]3.4e-1266.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGA+D QVKFNP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

YP_009757459.1 ribosomal protein L2 [Neofinetia xichangensis]2.2e-1166.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGAID QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

TrEMBL top hitse value%identityAlignment
A0A2H4E747 50S ribosomal protein L2, chloroplastic1.1e-1166.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGAID QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

A0A2H4EBM6 50S ribosomal protein L2, chloroplastic1.6e-1266.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGA+D QVKFNP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

A0A481XSS7 50S ribosomal protein L21.1e-1166.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGAID QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

A0A5D2VCL0 Uncharacterized protein1.6e-1266.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ
        T+ S  RNGA+D QVKFNPQ NLIY QHRC KG +AKG I    R G HKRLYH IDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ

A0A6G8J069 Ribosomal protein L21.1e-1166.1Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGAID QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

SwissProt top hitse value%identityAlignment
A6MM78 50S ribosomal protein L2, chloroplastic1.4e-1362.71Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+  S RNGA+D QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

A9LYE2 50S ribosomal protein L2, chloroplastic1.4e-1362.71Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGA+D QVK NP+ NLIY QH C KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

P60406 50S ribosomal protein L2, chloroplastic1.4e-1362.71Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+  S RNGA+D QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

Q3BAJ4 50S ribosomal protein L2, chloroplastic3.7e-1464.41Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGA+D QVK NP+ NLIY QHRC KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

Q3V4X1 50S ribosomal protein L2, chloroplastic1.4e-1362.71Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ
        T+ SS RNGA+D QVK NP+ NLIY QH C KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVS-RMGSHKRLYHKIDFQ

Arabidopsis top hitse value%identityAlignment
ATCG00830.1 ribosomal protein L25.6e-1359.32Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ
        T+  S RNGA+D QVK NP+ NLI  QH C KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ

ATCG01310.1 ribosomal protein L25.6e-1359.32Show/hide
Query:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ
        T+  S RNGA+D QVK NP+ NLI  QH C KGR+A+G I    R G HKRLY KIDF+
Subjt:  TNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIV-SRMGSHKRLYHKIDFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAATATTTAAATTAACAAATAACTCGAGTCCACGCAATGGAGCTATAGACATTCAAGTAAAATTCAATCCACAATATAATTTGATTTATAGACAGCATCGTTGTGCTAA
AGGTCGTGATGCGAAAGGAAGCATTATCGTGAGCAGAATGGGAAGTCATAAGCGTCTATACCATAAAATCGATTTTCAA
mRNA sequenceShow/hide mRNA sequence
CAAATATTTAAATTAACAAATAACTCGAGTCCACGCAATGGAGCTATAGACATTCAAGTAAAATTCAATCCACAATATAATTTGATTTATAGACAGCATCGTTGTGCTAA
AGGTCGTGATGCGAAAGGAAGCATTATCGTGAGCAGAATGGGAAGTCATAAGCGTCTATACCATAAAATCGATTTTCAA
Protein sequenceShow/hide protein sequence
QIFKLTNNSSPRNGAIDIQVKFNPQYNLIYRQHRCAKGRDAKGSIIVSRMGSHKRLYHKIDFQ