; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012123 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012123
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationscaffold708:472116..473879
RNA-Seq ExpressionMS012123
SyntenyMS012123
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]5.3e-6397.78Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_004136002.1 transcription initiation factor TFIID subunit 13 [Cucumis sativus]6.3e-6498.52Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]5.3e-6397.78Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]1.1e-65100Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]4.8e-6497.79Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

TrEMBL top hitse value%identityAlignment
A0A0A0KB69 Uncharacterized protein3.0e-6498.52Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A1S3BRL0 transcription initiation factor TFIID subunit 132.6e-6397.78Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 132.6e-6397.78Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 132.6e-6397.78Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 135.5e-66100Show/hide
Query:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 138.9e-3765.08Show/hide
Query:  NNPSAGPSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A  SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGPSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 136.3e-3865.08Show/hide
Query:  NNPSAGPSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A  SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGPSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCGCAGCCCTCGGAGACTTCTTTTAAGCGCAAACGAGGGGTTTTCCAGAAAGAATTGCAGCA
CATGATGTATGGATTTGGAGATGACCCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATTGTTGTGGAGTACATCACCGAACTGGTGTATAAAGCCCAGGAAA
TTGGATCAAAAAGGGGAAAACTTTCCGTGGAAGACTTTTTGTACTTAATGCGAAAGGACCCGCGCAAACTTAACCGCTCTACCGAACTGTTGTCGATGAACGAAGAGCTG
AAACAGGCAAGGAGGGCTTTTGAGATAGATGAAGACAAGCTGAAAAAGGCTTTTGAAGAAGAAGACAAGTTGGATCAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAATCCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCGCAGCCCTCGGAGACTTCTTTTAAGCGCAAACGAGGGGTTTTCCAGAAAGAATTGCAGCA
CATGATGTATGGATTTGGAGATGACCCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATTGTTGTGGAGTACATCACCGAACTGGTGTATAAAGCCCAGGAAA
TTGGATCAAAAAGGGGAAAACTTTCCGTGGAAGACTTTTTGTACTTAATGCGAAAGGACCCGCGCAAACTTAACCGCTCTACCGAACTGTTGTCGATGAACGAAGAGCTG
AAACAGGCAAGGAGGGCTTTTGAGATAGATGAAGACAAGCTGAAAAAGGCTTTTGAAGAAGAAGACAAGTTGGATCAG
Protein sequenceShow/hide protein sequence
MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEEL
KQARRAFEIDEDKLKKAFEEEDKLDQ