; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012129 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012129
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger protein GIS3-like
Genome locationscaffold708:513099..513602
RNA-Seq ExpressionMS012129
SyntenyMS012129
Gene Ontology termsGO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046676.1 zinc finger protein 6-like [Cucumis melo var. makuwa]5.8e-5167.2Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGT--------NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPP
        MSN NPSSILKLFGFPLV+HDD  PE  DG         NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH A ALR        PP 
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGT--------NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPP

Query:  LYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFA--AAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS
        LYS VF  N    GGGGG G  SR LPR  NGYFA  AAYG VSASSGRW+FGNS E G  ++ G          VDLHLKLSPS+
Subjt:  LYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFA--AAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS

KAG7025578.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-5369.66Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAH----ALRSPPSPPPPPP
        MSNQNPSSILKLFGFPLV+HDD+ P   DG     TNSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFH +     A  +  +    PP
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAH----ALRSPPSPPPPPP

Query:  PLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS
        P YS VF  NI    GGG  G   RFLPR  NGYF AAYG VSA SGRW+FGNS   GEKGS+D VGVVDLHLKLSPS
Subjt:  PLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS

XP_022154005.1 zinc finger protein GIS3-like [Momordica charantia]3.1e-8999.4Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP
        MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPP PLYSRVFAP
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP

Query:  NIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG
        NIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG
Subjt:  NIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG

XP_023004876.1 zinc finger protein GIS3-like [Cucurbita maxima]4.7e-5368.72Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHT-----AHALRSPPSPPPPP
        MSNQNPS+ILKLFGFPLV+HDD+ P   DG     TNSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFH      A ALR        P
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHT-----AHALRSPPSPPPPP

Query:  PPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS
        PP YS VF  +I    GGGG     RFLPR  +GYF AAYG VSA SGRW+FGNS   GEKGS+D V VVDLHLKLSPS
Subjt:  PPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS

XP_023514545.1 zinc finger protein 6-like [Cucurbita pepo subsp. pepo]1.4e-5268.72Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHT-----AHALRSPPSPPPPP
        MSNQNPSSILKLFG PLV+HDD+ P   DG     TNSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFH      A ALR        P
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHT-----AHALRSPPSPPPPP

Query:  PPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS
         P YS VF  NI    GGGG     RF+PR  NGYF AAYG VS  SGRW+FGNS   GEKGS+D VGVVDLHLKLSPS
Subjt:  PPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS

TrEMBL top hitse value%identityAlignment
A0A0A0K5R1 C2H2-type domain-containing protein1.2e-4665.05Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG------TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLY
        MSN NPSSILKLFGFPLV+HDD  PE  DG      T S+DDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH A ALR        PP LY
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG------TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLY

Query:  SRVFAPNIDVVGGGGGVGASSRFLPR--ISNGYF--AAAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS
        S VF  NI      GG G +SR L R   SNGYF   AAYG VSASSGRW+FGNS E G+ ++ G          VDLHLKLSPS+
Subjt:  SRVFAPNIDVVGGGGGVGASSRFLPR--ISNGYF--AAAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS

A0A1S3BSU1 zinc finger protein 6-like2.4e-5066.67Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGT--------NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPP
        MSN NPSSILKLFGFPLV+HDD  PE  DG         NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH A ALR        PP 
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGT--------NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPP

Query:  LYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFA--AAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS
        LYS VF  N    GGGGG    SR LPR  NGYFA  AAYG VSASSGRW+FGNS E G  ++ G          VDLHLKLSPS+
Subjt:  LYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFA--AAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS

A0A5D3D1T3 Zinc finger protein 6-like2.8e-5167.2Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGT--------NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPP
        MSN NPSSILKLFGFPLV+HDD  PE  DG         NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH A ALR        PP 
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGT--------NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPP

Query:  LYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFA--AAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS
        LYS VF  N    GGGGG G  SR LPR  NGYFA  AAYG VSASSGRW+FGNS E G  ++ G          VDLHLKLSPS+
Subjt:  LYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFA--AAYGSVSASSGRWIFGNSGEKGSSDHVG---------VVDLHLKLSPSS

A0A6J1DIE9 zinc finger protein GIS3-like1.5e-8999.4Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP
        MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPP PLYSRVFAP
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP

Query:  NIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG
        NIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG
Subjt:  NIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG

A0A6J1KTC7 zinc finger protein GIS3-like2.3e-5368.72Show/hide
Query:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHT-----AHALRSPPSPPPPP
        MSNQNPS+ILKLFGFPLV+HDD+ P   DG     TNSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFH      A ALR        P
Subjt:  MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHT-----AHALRSPPSPPPPP

Query:  PPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS
        PP YS VF  +I    GGGG     RFLPR  +GYF AAYG VSA SGRW+FGNS   GEKGS+D V VVDLHLKLSPS
Subjt:  PPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS

SwissProt top hitse value%identityAlignment
P93751 Zinc finger protein 83.7e-0850.77Show/hide
Query:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA-----LYFHTAH
        D D  K +  D  N +++R+F C +C R F  SQALGGHQNAHKRERQ AKR      L+ H  H
Subjt:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA-----LYFHTAH

Q39265 Zinc finger protein 63.0e-1046.94Show/hide
Query:  SSILKLFGFPLVDHDDVKPERSD---GTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP
        +S LKLFG  L++   V+ + S+   G+ S  + RK+ CQ+C R FANSQALGGHQNAHK+ERQ  KRA    T    R     P   P L    FAP
Subjt:  SSILKLFGFPLVDHDDVKPERSD---GTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP

Q39266 Zinc finger protein 78.2e-0853.7Show/hide
Query:  HDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY
        +DD K  + +     + R F C +CRR F +SQALGGHQNAHKRER  AKRA++
Subjt:  HDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY

Q84WI0 Zinc finger protein GIS4.8e-0844.78Show/hide
Query:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPS
        + D      +D  +   +R+F C +C R F  SQALGGHQNAHKRERQ AKR +  +  H   +P S
Subjt:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPS

Q9C9H1 Zinc finger protein GIS37.2e-1233.33Show/hide
Query:  SNQNPSSILKLFGFPLVDHDD------------VKPERSD-----------------GTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL
        S++  +S LKLFGF +   +D            V PER +                 G     +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA 
Subjt:  SNQNPSSILKLFGFPLVDHDD------------VKPERSD-----------------GTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL

Query:  YFHTAHA-------------LRSP-PSPPPPPPPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSV--SASSGRWIFGNSGEKGSSDH-VG
           T +A             LR+P  S   PPP L S    P          +G    +LPR+S      ++G V    S G    G S E G+ D   G
Subjt:  YFHTAHA-------------LRSP-PSPPPPPPPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSV--SASSGRWIFGNSGEKGSSDH-VG

Query:  VVDLHLK
        VV   ++
Subjt:  VVDLHLK

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 75.8e-0953.7Show/hide
Query:  HDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY
        +DD K  + +     + R F C +CRR F +SQALGGHQNAHKRER  AKRA++
Subjt:  HDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY

AT1G67030.1 zinc finger protein 62.1e-1146.94Show/hide
Query:  SSILKLFGFPLVDHDDVKPERSD---GTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP
        +S LKLFG  L++   V+ + S+   G+ S  + RK+ CQ+C R FANSQALGGHQNAHK+ERQ  KRA    T    R     P   P L    FAP
Subjt:  SSILKLFGFPLVDHDDVKPERSD---GTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAP

AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein5.1e-1333.33Show/hide
Query:  SNQNPSSILKLFGFPLVDHDD------------VKPERSD-----------------GTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL
        S++  +S LKLFGF +   +D            V PER +                 G     +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA 
Subjt:  SNQNPSSILKLFGFPLVDHDD------------VKPERSD-----------------GTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL

Query:  YFHTAHA-------------LRSP-PSPPPPPPPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSV--SASSGRWIFGNSGEKGSSDH-VG
           T +A             LR+P  S   PPP L S    P          +G    +LPR+S      ++G V    S G    G S E G+ D   G
Subjt:  YFHTAHA-------------LRSP-PSPPPPPPPLYSRVFAPNIDVVGGGGGVGASSRFLPRISNGYFAAAYGSV--SASSGRWIFGNSGEKGSSDH-VG

Query:  VVDLHLK
        VV   ++
Subjt:  VVDLHLK

AT2G41940.1 zinc finger protein 82.6e-0950.77Show/hide
Query:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA-----LYFHTAH
        D D  K +  D  N +++R+F C +C R F  SQALGGHQNAHKRERQ AKR      L+ H  H
Subjt:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA-----LYFHTAH

AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein3.4e-0944.78Show/hide
Query:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPS
        + D      +D  +   +R+F C +C R F  SQALGGHQNAHKRERQ AKR +  +  H   +P S
Subjt:  DHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAATCAAAATCCCTCCTCCATTCTAAAGCTATTCGGGTTTCCGTTGGTGGATCACGACGACGTTAAGCCGGAGAGATCCGACGGCACCAACTCCGACGACGACAG
GAAATTCCGGTGCCAATTCTGCCGCCGCGTTTTCGCCAACTCCCAGGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAAAGGGCCAAGCGCGCCCTCTATT
TCCACACCGCCCACGCACTCCGATCGCCGCCGTCTCCGCCGCCTCCGCCGCCGCCGCTTTACTCCAGAGTGTTCGCGCCCAACATTGACGTCGTCGGCGGCGGCGGCGGG
GTTGGTGCTTCTTCTAGATTTCTGCCCCGGATCAGTAACGGCTACTTTGCGGCGGCGTACGGCAGCGTGTCGGCGTCTTCGGGGCGGTGGATATTTGGGAATTCGGGTGA
AAAGGGATCGTCAGATCATGTGGGGGTTGTTGATCTTCATCTTAAACTTTCACCGTCGTCTGGT
mRNA sequenceShow/hide mRNA sequence
ATGTCCAATCAAAATCCCTCCTCCATTCTAAAGCTATTCGGGTTTCCGTTGGTGGATCACGACGACGTTAAGCCGGAGAGATCCGACGGCACCAACTCCGACGACGACAG
GAAATTCCGGTGCCAATTCTGCCGCCGCGTTTTCGCCAACTCCCAGGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAAAGGGCCAAGCGCGCCCTCTATT
TCCACACCGCCCACGCACTCCGATCGCCGCCGTCTCCGCCGCCTCCGCCGCCGCCGCTTTACTCCAGAGTGTTCGCGCCCAACATTGACGTCGTCGGCGGCGGCGGCGGG
GTTGGTGCTTCTTCTAGATTTCTGCCCCGGATCAGTAACGGCTACTTTGCGGCGGCGTACGGCAGCGTGTCGGCGTCTTCGGGGCGGTGGATATTTGGGAATTCGGGTGA
AAAGGGATCGTCAGATCATGTGGGGGTTGTTGATCTTCATCTTAAACTTTCACCGTCGTCTGGT
Protein sequenceShow/hide protein sequence
MSNQNPSSILKLFGFPLVDHDDVKPERSDGTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHTAHALRSPPSPPPPPPPLYSRVFAPNIDVVGGGGG
VGASSRFLPRISNGYFAAAYGSVSASSGRWIFGNSGEKGSSDHVGVVDLHLKLSPSSG