; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012134 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012134
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationscaffold708:538611..539060
RNA-Seq ExpressionMS012134
SyntenyMS012134
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]5.4e-3264.67Show/hide
Query:  MAHFISIAISISI--IFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQI--PPPPPPVVDC-----PPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPS
        MA+FI I ++  +  +  FSL+S A +AVAKDQ+ CSMCS+CDNPCQ+  PPPPPPVV+C     PPPPP PPPPLPTS+CPPP   P PPSCDACVYPS
Subjt:  MAHFISIAISISI--IFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQI--PPPPPPVVDC-----PPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPS

Query:  PP--------PPANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLG-LLIILC
        PP        PP++GGQFPGI  APPPPNPILPYFPYYY +PPSAS  SV  S K+L L  L+IILC
Subjt:  PP--------PPANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLG-LLIILC

KAG6575794.1 hypothetical protein SDJN03_26433, partial [Cucurbita argyrosperma subsp. sororia]4.2e-2961.64Show/hide
Query:  MAHFISIAISISIIFTFSLISPAMAAV-AKDQLTCSMCSSCDNPCQIPPPPPPVVDC-------PPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSP
        MA   SI +++ +I + S  SP+ A V A+DQ+ CSMC+SCDNPCQ+PPPPP +VDC       PPPPP PPPPLPT ECPPP   P PPSCDACVYPSP
Subjt:  MAHFISIAISISIIFTFSLISPAMAAV-AKDQLTCSMCSSCDNPCQIPPPPPPVVDC-------PPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSP

Query:  PP---PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL
        PP   P +GGQ+PG  LAPPPPNPILPYFPYYY  PPS S  SV  S K L L  ++ L
Subjt:  PP---PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]8.5e-3062.18Show/hide
Query:  MAHFISIAISISIIFTFSLISPAMAAV-AKDQLTCSMCSSCDNPCQIPPPPPP-----VVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP
        MA   SI +++  +F+ S  S ++A V A+DQ+ CSMCSSCDNPCQ+PPPPPP     VVDCPPPP PPPPPLP  ECPPP   P PPSCDACVYPSPPP
Subjt:  MAHFISIAISISIIFTFSLISPAMAAV-AKDQLTCSMCSSCDNPCQIPPPPPP-----VVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP

Query:  PA--------NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRL
        P+        +GGQ+PG+  APPPPNPILPYFPYYY  PPS S  SV  S K L L
Subjt:  PA--------NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRL

XP_023004682.1 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like [Cucurbita maxima]2.9e-3060.87Show/hide
Query:  MAHFISIAISISIIFT---FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP---
        MA+ +SI  +  ++FT   FS +S A  AVAKDQ+ CSMCSSCDNPCQ+PPPPPP               PTS+CPPPPP PPPPSC  CV+PSP P   
Subjt:  MAHFISIAISISIIFT---FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP---

Query:  -----PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL
             PA+GGQFPG+A  PPPPNPILPY+PYYY +PP+AS  SVSIS KIL LGLLII+CL
Subjt:  -----PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL

XP_023514546.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]5.5e-2959.01Show/hide
Query:  MAHFISIAISISIIFT---FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP---
        M + +SI  +  ++FT   FS +S A  AVAKDQ+ CSMCSSCDNPCQ+PPPPPP               PTS+CPPP   PPPPSC  C++PSP P   
Subjt:  MAHFISIAISISIIFT---FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP---

Query:  -----PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL
             PA+GGQFPG  LAPPPPNPILPY+PYYY +PP+AS  SVSIS KIL LGLLII+CL
Subjt:  -----PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein2.0e-3264.85Show/hide
Query:  MAHFISIAISISI--IFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQI--PPPPPPVVDCP-----PPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPS
        MA+ ISI ++  +  +  FSL+S A  AVAKDQ+ CSMCS+CDNPCQ+  PPPPPPVV+CP     PPPP PPPPLPTS+CPPP   P PPSCDACVYPS
Subjt:  MAHFISIAISISI--IFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQI--PPPPPPVVDCP-----PPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPS

Query:  PPPPAN--------GGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL
        PPPP++        GGQFPGI  APPPPNPILPYFPYYY +PPSAS  SV  S K L L  LIIL
Subjt:  PPPPAN--------GGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL

A0A5D3D2P5 Extensin-22.6e-3264.67Show/hide
Query:  MAHFISIAISISI--IFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQI--PPPPPPVVDC-----PPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPS
        MA+FI I ++  +  +  FSL+S A +AVAKDQ+ CSMCS+CDNPCQ+  PPPPPPVV+C     PPPPP PPPPLPTS+CPPP   P PPSCDACVYPS
Subjt:  MAHFISIAISISI--IFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQI--PPPPPPVVDC-----PPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPS

Query:  PP--------PPANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLG-LLIILC
        PP        PP++GGQFPGI  APPPPNPILPYFPYYY +PPSAS  SV  S K+L L  L+IILC
Subjt:  PP--------PPANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLG-LLIILC

A0A6J1GPW6 leucine-rich repeat extensin-like protein 31.7e-2858.58Show/hide
Query:  HFISIAISISIIFT--------FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLP-------TSECPPPPPSPPPPSCDAC
        HF S+A   SI  T        FSL SP ++  A+DQ+ CSMC+SCDNPCQ+PPPPP +VDCPPPP PPPPP P       T ECPPP   P PPSCDAC
Subjt:  HFISIAISISIIFT--------FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLP-------TSECPPPPPSPPPPSCDAC

Query:  VYPSPPPPA--------NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL
        VYPSPPPP+        +GGQ+PG  LAPPPPNPILPYFPYYY  PPS S  SV  S K L L  ++ L
Subjt:  VYPSPPPPA--------NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL

A0A6J1JMT5 leucine-rich repeat extensin-like protein 34.1e-3062.18Show/hide
Query:  MAHFISIAISISIIFTFSLISPAMAAV-AKDQLTCSMCSSCDNPCQIPPPPPP-----VVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP
        MA   SI +++  +F+ S  S ++A V A+DQ+ CSMCSSCDNPCQ+PPPPPP     VVDCPPPP PPPPPLP  ECPPP   P PPSCDACVYPSPPP
Subjt:  MAHFISIAISISIIFTFSLISPAMAAV-AKDQLTCSMCSSCDNPCQIPPPPPP-----VVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP

Query:  PA--------NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRL
        P+        +GGQ+PG+  APPPPNPILPYFPYYY  PPS S  SV  S K L L
Subjt:  PA--------NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRL

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like1.4e-3060.87Show/hide
Query:  MAHFISIAISISIIFT---FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP---
        MA+ +SI  +  ++FT   FS +S A  AVAKDQ+ CSMCSSCDNPCQ+PPPPPP               PTS+CPPPPP PPPPSC  CV+PSP P   
Subjt:  MAHFISIAISISIIFT---FSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPP---

Query:  -----PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL
             PA+GGQFPG+A  PPPPNPILPY+PYYY +PP+AS  SVSIS KIL LGLLII+CL
Subjt:  -----PANGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G16140.1 proline-rich family protein5.7e-0844.08Show/hide
Query:  FTFSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLP-TSECPPPPPSP--------PPPSCDACVYPSP---------PPPA
        FT +L SP+  A       C+MC+SCDNPCQ  P PPP    PP  P PPPP P T+ CPPPP S         PP S      P P         PPP 
Subjt:  FTFSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLP-TSECPPPPPSP--------PPPSCDACVYPSP---------PPPA

Query:  NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL
        +GG +P      PPPNPI+PYFP+YY NPP  S  S S +      G+  IL
Subjt:  NGGQFPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIIL

AT5G49280.1 hydroxyproline-rich glycoprotein family protein7.3e-1140.62Show/hide
Query:  SISIIFTFSLISPAMAAVAKDQ-LTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSP----------PPPSCDACVYPSPPPPANG
        ++S +    L+S      +KD+ ++C+MCSSCDNPC       PV   PPPP PPPP  PT+ CPPPP  P          PPPS        PPP   G
Subjt:  SISIIFTFSLISPAMAAVAKDQ-LTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSP----------PPPSCDACVYPSPPPPANG

Query:  GQ-------FPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLL-IILCL
        GQ       + G    PPPPNPI+PYFP+YY  PP  S +   +S   +   L  + LCL
Subjt:  GQ-------FPGIALAPPPPNPILPYFPYYYLNPPSASANSVSISLKILRLGLL-IILCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCATTTCATCTCCATCGCCATCTCCATCTCCATCATTTTCACTTTTTCCTTAATTTCGCCTGCAATGGCCGCCGTCGCCAAGGATCAACTCACCTGTTCCATGTG
CTCAAGTTGCGACAATCCCTGCCAAATTCCGCCGCCGCCTCCGCCGGTCGTTGACTGCCCTCCTCCTCCACCGCCTCCGCCGCCGCCGCTCCCCACTTCCGAATGCCCCC
CTCCTCCCCCTTCTCCGCCGCCCCCCTCCTGCGACGCCTGCGTCTACCCTTCCCCGCCGCCGCCGGCCAACGGCGGGCAGTTTCCCGGGATTGCCCTTGCCCCGCCGCCG
CCGAACCCAATTTTGCCGTATTTTCCTTACTATTATCTGAATCCCCCTTCGGCTTCTGCCAATTCCGTCTCGATTTCATTGAAGATTCTGCGTTTGGGTTTATTAATCAT
TCTCTGCCTC
mRNA sequenceShow/hide mRNA sequence
ATGGCCCATTTCATCTCCATCGCCATCTCCATCTCCATCATTTTCACTTTTTCCTTAATTTCGCCTGCAATGGCCGCCGTCGCCAAGGATCAACTCACCTGTTCCATGTG
CTCAAGTTGCGACAATCCCTGCCAAATTCCGCCGCCGCCTCCGCCGGTCGTTGACTGCCCTCCTCCTCCACCGCCTCCGCCGCCGCCGCTCCCCACTTCCGAATGCCCCC
CTCCTCCCCCTTCTCCGCCGCCCCCCTCCTGCGACGCCTGCGTCTACCCTTCCCCGCCGCCGCCGGCCAACGGCGGGCAGTTTCCCGGGATTGCCCTTGCCCCGCCGCCG
CCGAACCCAATTTTGCCGTATTTTCCTTACTATTATCTGAATCCCCCTTCGGCTTCTGCCAATTCCGTCTCGATTTCATTGAAGATTCTGCGTTTGGGTTTATTAATCAT
TCTCTGCCTC
Protein sequenceShow/hide protein sequence
MAHFISIAISISIIFTFSLISPAMAAVAKDQLTCSMCSSCDNPCQIPPPPPPVVDCPPPPPPPPPPLPTSECPPPPPSPPPPSCDACVYPSPPPPANGGQFPGIALAPPP
PNPILPYFPYYYLNPPSASANSVSISLKILRLGLLIILCL