CuGenDBv2

Gene ID	MS012159
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1
Genome location	scaffold797:21086..23888
RNA-Seq Expression	MS012159
Synteny	MS012159
Gene Ontology terms	GO:0009787 - regulation of abscisic acid-activated signaling pathway (biological process) GO:0010100 - negative regulation of photomorphogenesis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domains	IPR039324 - Protein SHORT HYPOCOTYL IN WHITE LIGHT 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588721.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-88

87.86

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  H Q    +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GG ED+ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_022148690.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia]

3.2e-104

98.54

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MSFPAALSPPSLFSIPQYHFQP FSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGE+DEEDEEDEEDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_022927841.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]

3.2e-88

87.86

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  H Q    +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GG ED+ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_022988955.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]

5.9e-90

88.35

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  + QPP  +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GG ED+ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_038877542.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]

7.7e-90

86.89

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS  AALSPPSLFSIPQ   QPPF +SRTSLLSHPFQISHTLLRASRR SNFSQGVDNLVDDRRNWNR I SDFD++GGEE+E+D++++EDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVS+RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVF+SILIIRGVWTGILYLQD R+HR DQLD++QH AWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQP S
Subjt:  GAQPAS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D3L5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1

1.6e-104

98.54

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MSFPAALSPPSLFSIPQYHFQP FSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGE+DEEDEEDEEDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1EIN7 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

1.6e-88

87.86

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  H Q    +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GG ED+ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1GJK6 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

2.1e-85

84.95

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS  AA SPPSLF++PQY  QPPF +SRT LLSHPFQ+SH LLRASRR SNFSQGVD+ VDDRRNWN  I SDFD++GGEE+EE+EED EDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LV+FVENVFRKVS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYLQDIRSHR DQLD++Q HAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1I8W5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

9.5e-86

85.1

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Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDE--EEDRSL
        MS   A SPPSLF++PQY  QPPF +SRT LLS PFQISH LLRASRR SNFSQGVDN VDDRRNWN  I SDFD++GGEE+E +EEDEEDE  EEDRSL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDE--EEDRSL

Query:  DLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHA
        DLLV+FVENVFRKVS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLD++Q HA
Subjt:  DLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHA

Query:  WTGAQPAS
        WTGAQPAS
Subjt:  WTGAQPAS

A0A6J1JL13 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

2.9e-90

88.35

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  + QPP  +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GG ED+ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

SwissProt top hits

e value

%identity

Alignment

F4I3V6 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1

3.1e-17

36.67

Show/hide

Query:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEEDEEDEEDEEDEEEDRSLDLL
        +++ T+L S     S TL+ AS R  + +    N +  RR +   NR ++S                    ++D+V  ++   D++DEEDE E  S+DLL
Subjt:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEEDEEDEEDEEDEEEDRSLDLL

Query:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ
        +RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Subjt:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G69935.1 short hypocotyl in white light1

2.2e-18

36.67

Show/hide

Query:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEEDEEDEEDEEDEEEDRSLDLL
        +++ T+L S     S TL+ AS R  + +    N +  RR +   NR ++S                    ++D+V  ++   D++DEEDE E  S+DLL
Subjt:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEEDEEDEEDEEDEEEDRSLDLL

Query:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ
        +RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Subjt:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ

AT4G33780.1 FUNCTIONS IN: molecular_function unknown

2.3e-47

55.07

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEED-EEEDRSLD
        M F A++S PS            F  +  +L+    +IS     ASRR  +F  G D+  DD R+WNR I  ++   G +ED + EED++D EEEDRSLD
Subjt:  MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEED-EEEDRSLD

Query:  LLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAW
        LL+RFVENVFRK+SKRARKAVRS+LP SI TKLVGFSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q+ R++R ++L ++   AW
Subjt:  LLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAW

Query:  TGAQPAS
         G QP S
Subjt:  TGAQPAS

Sequences

Show/hide sequences

CDS sequence

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ATGTCCTTTCCCGCCGCTCTTTCACCGCCGTCCCTCTTCTCCATACCTCAATACCATTTTCAACCGCCATTTTCAAGCTCTCGAACCTCGCTTCTCTCCCATCCCTTCCA
AATCTCTCACACGCTCCTCCGGGCTTCCAGAAGACCCTCCAATTTCTCTCAGGGAGTCGATAATTTGGTGGATGATCGGCGCAATTGGAACCGCCCGATTAGCTCTGACT
TCGACATAGTCGGTGGAGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCGATTTGTTGAAAATGTTTTCAGG
AAGGTCTCGAAGCGAGCCCGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCCACCAAACTGGTGGGATTTTCTGTCAATGGGGTGCTAATGCTCGCGTTTTTGTG
GGTCTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATTATCCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCC
GTAGCCACCGATTCGATCAACTCGACAACGAGCAGCATCATGCCTGGACTGGTGCACAGCCTGCATCC

mRNA sequence

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Protein sequence

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MSFPAALSPPSLFSIPQYHFQPPFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEEDEEDEEDEEDEEEDRSLDLLVRFVENVFR
KVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWTGAQPAS

MS012159 (gene) of Bitter gourd (TR) v1 genome