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MS012178 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012178
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEpidermal patterning factor-like protein
Genome locationscaffold797:158695..158889
RNA-Seq ExpressionMS012178
SyntenyMS012178
Gene Ontology termsGO:0010052 - guard cell differentiation (biological process)
GO:0045493 - xylan catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
GO:0009044 - xylan 1,4-beta-xylosidase activity (molecular function)
InterPro domainsIPR039455 - EPIDERMAL PATTERNING FACTOR-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645843.1 hypothetical protein Csa_017281 [Cucumis sativus]8.0e-2582.35Show/hide
Query:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRS-MEMVE--NIEYYPQVWRCMCHHDIFFP
        GSHKGV++RRH RKGSFP VCDSKCN CKPC LVQVSVRS M++VE  NIEYYPQVWRCMCHH+IFFP
Subjt:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRS-MEMVE--NIEYYPQVWRCMCHHDIFFP

KAG6571922.1 EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2481.82Show/hide
Query:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVE-NIEYYPQVWRCMCHHDIFFP
        G HKGV  R+HMRKGSFP  CDSKCN CKPC LVQVSVRSM +VE NIEYYPQVWRCMCHH+IFFP
Subjt:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVE-NIEYYPQVWRCMCHHDIFFP

KAG7011608.1 EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2481.82Show/hide
Query:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVE-NIEYYPQVWRCMCHHDIFFP
        G HKGV  R+HMRKGSFP  CDSKCN CKPC LVQVSVRSM +VE NIEYYPQVWRCMCHH+IFFP
Subjt:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVE-NIEYYPQVWRCMCHHDIFFP

PRQ22756.1 hypothetical protein RchiOBHm_Chr6g0253751 [Rosa chinensis]2.4e-1361.29Show/hide
Query:  KGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        KG+F+++  R+GSFPA C SKCN C+PC+ VQVSVR+ME+ EN EYYP VW+C C  +IF P
Subjt:  KGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

XP_019074391.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Vitis vinifera]3.2e-1359.7Show/hide
Query:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        G  K +FER     R+GSFPA C SKCN C PC+ V+V+VR  E  EN EYYPQVWRCMCH  +F P
Subjt:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

TrEMBL top hitse value%identityAlignment
A0A2P6PLG8 Epidermal patterning factor-like protein1.2e-1361.29Show/hide
Query:  KGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        KG+F+++  R+GSFPA C SKCN C+PC+ VQVSVR+ME+ EN EYYP VW+C C  +IF P
Subjt:  KGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

A0A438GJP6 Putative beta-D-xylosidase 51.5e-1359.7Show/hide
Query:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        G  K +FER     R+GSFPA C SKCN C PC+ V+V+VR  E  EN EYYPQVWRCMCH  +F P
Subjt:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

A5AHE5 Fn3_like domain-containing protein1.5e-1359.7Show/hide
Query:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        G  K +FER     R+GSFPA C SKCN C PC+ V+V+VR  E  EN EYYPQVWRCMCH  +F P
Subjt:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

B9SNE3 Epidermal patterning factor-like protein1.5e-1366.04Show/hide
Query:  RKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        +KGSFPA C SKCN C PC+ V+VS+RSME+ E   YYPQVW+CMC  DIF P
Subjt:  RKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

D7SXR0 Fn3_like domain-containing protein1.5e-1359.7Show/hide
Query:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        G  K +FER     R+GSFPA C SKCN C PC+ V+V+VR  E  EN EYYPQVWRCMCH  +F P
Subjt:  GSHKGVFER--RHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

SwissProt top hitse value%identityAlignment
Q1G3V9 EPIDERMAL PATTERNING FACTOR-like protein 81.2e-0432.84Show/hide
Query:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSM--EMVENIEYYPQVWRCMCHHDIFFP
        G+H      +    GS P VC +KC +CKPC+     +R    +  ++  YYP  W C C   +F P
Subjt:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSM--EMVENIEYYPQVWRCMCHHDIFFP

Q2V3I3 EPIDERMAL PATTERNING FACTOR-like protein 41.0e-0643.14Show/hide
Query:  GSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        GS P  C SKC  C+PC  V V ++   +   +EYYP+ WRC C + +F P
Subjt:  GSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

Q9LUH9 EPIDERMAL PATTERNING FACTOR-like protein 52.7e-0738.33Show/hide
Query:  VFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        V ++R    GS P +C  KC  C+PC  V V ++   ++  +EYYP+ WRC C + +F P
Subjt:  VFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

Arabidopsis top hitse value%identityAlignment
AT1G80133.1 unknown protein8.9e-0632.84Show/hide
Query:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSM--EMVENIEYYPQVWRCMCHHDIFFP
        G+H      +    GS P VC +KC +CKPC+     +R    +  ++  YYP  W C C   +F P
Subjt:  GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSM--EMVENIEYYPQVWRCMCHHDIFFP

AT3G22820.1 allergen-related1.9e-0838.33Show/hide
Query:  VFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        V ++R    GS P +C  KC  C+PC  V V ++   ++  +EYYP+ WRC C + +F P
Subjt:  VFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP

AT4G14723.1 BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1)7.2e-0843.14Show/hide
Query:  GSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP
        GS P  C SKC  C+PC  V V ++   +   +EYYP+ WRC C + +F P
Subjt:  GSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAAGCCATAAAGGAGTGTTTGAAAGGAGGCATATGAGGAAGGGCTCATTTCCAGCAGTGTGTGATTCAAAGTGCAACCATTGCAAACCTTGCATACTTGTTCAAGTATC
AGTTAGATCCATGGAAATGGTTGAGAATATTGAATACTATCCTCAAGTATGGAGGTGCATGTGTCATCACGATATATTTTTTCCA
mRNA sequenceShow/hide mRNA sequence
GGAAGCCATAAAGGAGTGTTTGAAAGGAGGCATATGAGGAAGGGCTCATTTCCAGCAGTGTGTGATTCAAAGTGCAACCATTGCAAACCTTGCATACTTGTTCAAGTATC
AGTTAGATCCATGGAAATGGTTGAGAATATTGAATACTATCCTCAAGTATGGAGGTGCATGTGTCATCACGATATATTTTTTCCA
Protein sequenceShow/hide protein sequence
GSHKGVFERRHMRKGSFPAVCDSKCNHCKPCILVQVSVRSMEMVENIEYYPQVWRCMCHHDIFFP