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MS012200 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012200
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold797:381533..382083
RNA-Seq ExpressionMS012200
SyntenyMS012200
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]1.5e-5572.11Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MS+SEI+EES LECYCG+ AKLR S T K PFRLFYNCPKEISQQCGFFHWADE EPS+DRH  EL+LIRNVC+ L +RLD I EEH++EK EWEREK E
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVI
        LTL+L TLQ+QLDDI +R+R+ NESFSMPP ++LSIRDD+ D+ + I
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVI

KAF2294607.1 hypothetical protein GH714_013386 [Hevea brasiliensis]1.7e-4662.24Show/hide
Query:  EESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEELTLQLVT
        E+SE+ C CGLPAKLR SQTP+NPFRLFYNCP+  + QCGFF W DEP P+ DRH +E+NLIRN C  LQ RLD IE+ H+N+++ WEREK EL L+L T
Subjt:  EESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEELTLQLVT

Query:  LQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
        +Q++LD+I+ R+R  NES  MPPLD L I DDEGDD + I+T+
Subjt:  LQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]2.5e-5874Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MS+SEI+EES LECYCG+ AKLR S T K PFRLFYNCPKEISQQCGFFHWADE EPS+DRH  EL+LIRNVC+ L +RLD I EEH++EK EWEREK E
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
        LTL+L TLQ+QLDDI +R+R+ NESFSMPP ++LSIRDD+ D+ LVIYTL
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]3.3e-5874.17Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MS+SEI+EES LECYCG  AKLR S T KNPFRLFYNCPKE+SQQCGFFHWADEPEPSDDRH  EL+LIRNVC+ L +RLD I EEH++EK EWEREK E
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIR-DDEGDDALVIYTL
        LTL+L TLQ+QLDDI +RIR+ NESFSMPP ++LSIR DD+ +D LV+Y L
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIR-DDEGDDALVIYTL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]6.9e-8098.67Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLD IEEEHDNEKAEWER+KEE
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
        LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein1.2e-5874Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MS+SEI+EES LECYCG+ AKLR S T K PFRLFYNCPKEISQQCGFFHWADE EPS+DRH  EL+LIRNVC+ L +RLD I EEH++EK EWEREK E
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
        LTL+L TLQ+QLDDI +R+R+ NESFSMPP ++LSIRDD+ D+ LVIYTL
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL

A0A1S4E0B8 uncharacterized protein LOC1034952841.6e-5874.17Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MS+SEI+EES LECYCG  AKLR S T KNPFRLFYNCPKE+SQQCGFFHWADEPEPSDDRH  EL+LIRNVC+ L +RLD I EEH++EK EWEREK E
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIR-DDEGDDALVIYTL
        LTL+L TLQ+QLDDI +RIR+ NESFSMPP ++LSIR DD+ +D LV+Y L
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIR-DDEGDDALVIYTL

A0A5A7SJM5 GRF-type domain-containing protein1.6e-5874.17Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MS+SEI+EES LECYCG  AKLR S T KNPFRLFYNCPKE+SQQCGFFHWADEPEPSDDRH  EL+LIRNVC+ L +RLD I EEH++EK EWEREK E
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIR-DDEGDDALVIYTL
        LTL+L TLQ+QLDDI +RIR+ NESFSMPP ++LSIR DD+ +D LV+Y L
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIR-DDEGDDALVIYTL

A0A6A6L2I8 GRF-type domain-containing protein8.3e-4762.24Show/hide
Query:  EESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEELTLQLVT
        E+SE+ C CGLPAKLR SQTP+NPFRLFYNCP+  + QCGFF W DEP P+ DRH +E+NLIRN C  LQ RLD IE+ H+N+++ WEREK EL L+L T
Subjt:  EESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEELTLQLVT

Query:  LQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
        +Q++LD+I+ R+R  NES  MPPLD L I DDEGDD + I+T+
Subjt:  LQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL

A0A6J1D427 uncharacterized protein LOC1110173993.3e-8098.67Show/hide
Query:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE
        MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLD IEEEHDNEKAEWER+KEE
Subjt:  MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEE

Query:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
        LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL
Subjt:  LTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein3.0e-0442.22Show/hide
Query:  ELECYCGL-PAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADE
        ++ C C   P    TS+T KNP R FY CP      CG+F W D+
Subjt:  ELECYCGL-PAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADE

AT3G42860.1 zinc knuckle (CCHC-type) family protein3.2e-0648Show/hide
Query:  ELECYCGLP-AKLRTSQTPKNPFRLFYNCP-KEISQQCGFFHWADEPEPS
        E  C CG+    + TS TPKNP R FY CP +E +  CGFF W D  + S
Subjt:  ELECYCGLP-AKLRTSQTPKNPFRLFYNCP-KEISQQCGFFHWADEPEPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTTCGGAAATTTTTGAAGAATCTGAACTAGAATGTTACTGTGGACTGCCTGCAAAACTGAGAACATCTCAGACACCCAAAAATCCATTCAGATTATTCTACAA
CTGTCCAAAGGAAATATCTCAACAATGTGGTTTTTTTCATTGGGCTGATGAACCCGAACCATCTGATGATAGACACGTCGAGGAACTAAACTTAATCCGTAATGTGTGCC
TTCATCTACAAGATAGATTAGATGTAATCGAAGAGGAACATGATAATGAGAAAGCTGAGTGGGAAAGGGAAAAAGAAGAGCTAACATTGCAACTAGTAACTCTGCAATCT
CAGCTTGATGATATTCAGCATAGAATAAGGATGGCAAATGAATCATTTTCAATGCCTCCCTTGGATGCACTTTCCATTAGGGATGACGAGGGCGACGATGCATTAGTTAT
ATATACTTTG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACTTCGGAAATTTTTGAAGAATCTGAACTAGAATGTTACTGTGGACTGCCTGCAAAACTGAGAACATCTCAGACACCCAAAAATCCATTCAGATTATTCTACAA
CTGTCCAAAGGAAATATCTCAACAATGTGGTTTTTTTCATTGGGCTGATGAACCCGAACCATCTGATGATAGACACGTCGAGGAACTAAACTTAATCCGTAATGTGTGCC
TTCATCTACAAGATAGATTAGATGTAATCGAAGAGGAACATGATAATGAGAAAGCTGAGTGGGAAAGGGAAAAAGAAGAGCTAACATTGCAACTAGTAACTCTGCAATCT
CAGCTTGATGATATTCAGCATAGAATAAGGATGGCAAATGAATCATTTTCAATGCCTCCCTTGGATGCACTTTCCATTAGGGATGACGAGGGCGACGATGCATTAGTTAT
ATATACTTTG
Protein sequenceShow/hide protein sequence
MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDVIEEEHDNEKAEWEREKEELTLQLVTLQS
QLDDIQHRIRMANESFSMPPLDALSIRDDEGDDALVIYTL