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MS012201 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012201
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold797:390096..390386
RNA-Seq ExpressionMS012201
SyntenyMS012201
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7814608.1 putative ZmL1 non-LTR retrotransposon protein [Senna tora]8.6e-0740.74Show/hide
Query:  SQQWWPPSGTSLKLNTDAAYRSTSTG-FGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESD
        S +W PP  +++K+N DA Y + S G  G  IRN N   + AK + +P   S   +E   I +G+KFA+  NC++IEVE D
Subjt:  SQQWWPPSGTSLKLNTDAAYRSTSTG-FGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESD

KAF7831568.1 uncharacterized protein G2W53_013901 [Senna tora]1.5e-0641.38Show/hide
Query:  SPHPRTSQQWWPPSGTSLKLNTDAAYRS-TSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESD
        S H      W PP+   LK+N DA  RS  +TGFG  IRN    ++GA +   P   S  L+E   +  G++FAR  +CS IEVE D
Subjt:  SPHPRTSQQWWPPSGTSLKLNTDAAYRS-TSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESD

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]3.6e-1347.31Show/hide
Query:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG
        P  S +W PP  +++K+N+DAA RSTSTG G+ IR+    L+ AKS+ +P  L+PL  EIR I + LK A S + +R+ VESD   AI L++G
Subjt:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.4e-1958.95Show/hide
Query:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR
        S H    Q W P S  SLKLNTDAA R  ST FG  IR+S+ +L+ A S+ VPF LSPLL EIR I +GLKFA ++N + +EVESDSL+AI LIR
Subjt:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR

XP_038690886.1 uncharacterized protein LOC119989439 [Tripterygium wilfordii]1.1e-0637.5Show/hide
Query:  QWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG
        +W PP  + +K+N DAA R +    GV  R++  A I +KS+ VP  L+PL  E     + L F +S NC  + +E DSL+ I  + G
Subjt:  QWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047861.7e-1347.31Show/hide
Query:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG
        P  S +W PP  +++K+N+DAA RSTSTG G+ IR+    L+ AKS+ +P  L+PL  EIR I + LK A S + +R+ VESD   AI L++G
Subjt:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG

A0A6J1DPU1 uncharacterized protein LOC1110224262.1e-0641.3Show/hide
Query:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAK-SLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI
        PR +    PP G  +K+NTDAA  +  +G GV +R+ N  ++ A    HV    +PLL EI  I +GL+ A      R+ VESDSL A++LI
Subjt:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAK-SLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI

A0A6J1DX30 uncharacterized protein LOC1110248742.1e-1958.95Show/hide
Query:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR
        S H    Q W P S  SLKLNTDAA R  ST FG  IR+S+ +L+ A S+ VPF LSPLL EIR I +GLKFA ++N + +EVESDSL+AI LIR
Subjt:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR

A0A6J1DZK3 uncharacterized protein LOC1110249682.1e-0639.56Show/hide
Query:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI
        PR + +W PP G  +K+NTDAA     +G GV +R  N  ++GA  +      +PLL +I  I +GL  A      R+ VE+DSL A++LI
Subjt:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI

M5XQU3 RNase H domain-containing protein2.7e-0640.62Show/hide
Query:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTS--TGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI
        SPHP     W PP  + +K+NTD +++S S   G GV IR    + IG  +  VP A SPL+ E+  +  GL  A+  N   + VESDS VAI+ +
Subjt:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTS--TGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTATCTCCACATCCTCGAACCTCTCAACAATGGTGGCCTCCATCTGGAACCTCTTTGAAGTTAAATACTGATGCTGCTTACCGGAGCACCTCAACTGGATTCGGAGTTGC
TATTCGAAACTCAAACAGAGCTCTCATCGGAGCAAAATCCTTACATGTACCTTTCGCATTATCGCCCTTGCTTATTGAAATCAGAGACATCTTTGATGGTTTAAAGTTCG
CCCGCTCCACAAATTGTTCACGAATTGAAGTTGAATCAGACTCTTTGGTGGCTATCCATTTGATTCGGGGA
mRNA sequenceShow/hide mRNA sequence
GTATCTCCACATCCTCGAACCTCTCAACAATGGTGGCCTCCATCTGGAACCTCTTTGAAGTTAAATACTGATGCTGCTTACCGGAGCACCTCAACTGGATTCGGAGTTGC
TATTCGAAACTCAAACAGAGCTCTCATCGGAGCAAAATCCTTACATGTACCTTTCGCATTATCGCCCTTGCTTATTGAAATCAGAGACATCTTTGATGGTTTAAAGTTCG
CCCGCTCCACAAATTGTTCACGAATTGAAGTTGAATCAGACTCTTTGGTGGCTATCCATTTGATTCGGGGA
Protein sequenceShow/hide protein sequence
VSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHVPFALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRG