CuGenDBv2

Gene ID	MS012218
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold797:522640..523161
RNA-Seq Expression	MS012218
Synteny	MS012218
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7548646.1 Reverse transcriptase domain [Arabidopsis suecica]

2.6e-38

47.7

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I+GI I+  SPS+SHL FA DSL FCKA+I +   I  IL +YE  SGQQINF KS +     V +  K+ +KS++G+  +  +G YLGLP  L  SK+K
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F F+++R++  I GW   F S GGKEV++KSV  A+PTY MSCFR   T  +++T+ +A+FWW S    R +H
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

KAG7567448.1 Reverse transcriptase domain [Arabidopsis thaliana x Arabidopsis arenosa]

1.8e-39

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I+GI I   SPS+SHL FA DSL FCKA+  +   I  IL +YE  SGQQINF KS +     V ED K  +KS +G+T +  +G YLGLP  L  SK+K
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F F+KDR++  I GW   F S GGKEV++KSV  A+PTY MSCFR   T  +++T+++A+FWW S    R +H
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

KAG7567823.1 Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa]

4.4e-38

47.7

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I+GI +   SPS+SHL FA DSL FCKA+  +   I  IL +YE  SGQQINF+KS +     V +D K  +K+ +G+T +  +G YLGLP  L  SK+K
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F F++DR++  I GW   F S GGKEV++KSV  A+PTY MSCFR   T  +++T+ +A FWW S    R +H
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

XP_030925041.1 uncharacterized protein LOC115952099 [Quercus lobata]

3.4e-38

46.55

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I GISI  N P ++HLFFA DSL+FC+A + E   I+ +L  YE+ASGQQ+N EK+ L+   N   + +  +K L G+  +     YLGLP+ + K K  
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
           ++KDRI   +QGWKE   S  G+EVLLK+V QAIP Y+MSCF+   + C E+ T + +FWWG   +RRRIH
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

XP_030939568.1 uncharacterized protein LOC115964386 [Quercus lobata]

4.4e-38

44.25

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        + G+S+    P +SHLFFA DSL+FC+A+  +  TI  IL +YERASGQQIN EK+ L+  PN     + ++KS +G++   H+  YLGLP  + + K K
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F ++++RI   IQGWKE   S GG+EVL+K+V QA+P+Y M CF    + C ++ + + +FWWG     R+IH
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

TrEMBL top hits

e value

%identity

Alignment

A0A2N9F086 Reverse transcriptase domain-containing protein

7.4e-39

44.25

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        +SGISI+   P +SHL FA DSL+FC+A   E   +  +L  YE++SGQ+IN +K+ ++   N KE+ +  ++ + G  ++     YLG+PAM+ +SK +
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F  LKDRI + +QGW E F S  G+EVL+K+V Q+IPT+ MSCF+    FC ++   +A+FWWGS+ +RR+IH
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

A0A2N9F2M3 Uncharacterized protein

5.7e-39

45.4

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I G++I   SP ISHLFFA DS++FC+A   +   +   L  YERASGQ++N  K+ L+  PN   D ++ + +L G +   H   YLGLP ++ +SK +
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F  +KDR+ R +QGWKE   S  G+EVL+K++ QAIPTYAMSCF+F    C+++ +   RFWWG  Q  R+IH
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

A0A2N9FD73 Uncharacterized protein

1.6e-38

44.83

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        +SGISI+   P +SHL FA DSL+FC+A+  E   +  +L  YE +SGQ+IN EK+ ++   N K + ++ ++S+ G  +V     YLG+PAM+ +SK +
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F  LKDRI + +QGW E F S  G+EVL+K++ Q+IPT+ MSCFR    FC ++   +A+FWWGS+   R+IH
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

A0A2N9H9Z1 Reverse transcriptase domain-containing protein

4.3e-39

45.98

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I G++I   SP ISHLFFA DS++FC+A   +   +   L  YERASGQ++N  K+ L+  PN   D ++ + +L G +   H   YLGLP ++ +SK +
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F  +KDR+ R +QGWKE   S  G+EVL+K+V QAIPTYAMSCF+F    C+++ +   RFWWG  Q  R+IH
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

A0A5B7AER2 Reverse transcriptase domain-containing protein

1.3e-38

48.28

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Query:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK
        I GI++  N+P ISHLFFA DSL+F KA   ++  I  I+  Y  ASGQQINF+KS L   PNV ED +  +K ++G++L      YLGLP+ + +SK +
Subjt:  ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSK

Query:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH
         F F+KDR+ R +QGWKE   S  G+EVL+K V QA+PTY MS F+   T C E+   ++RFWWG   S R++H
Subjt:  DFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

8.8e-05

44.74

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Query:  AIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRI
        A+P YAMSCFR     C ++T+ +  FWW S +++R+I
Subjt:  AIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRI

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

4.0e-05

29.27

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Query:  YLGLPAMLSKSKSKDFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQ
        YLGLP +  K  + D+  L ++IR  I  W     S  G+  L+ SV  ++  + MS FR  +    E+ +  + F W   +
Subjt:  YLGLPAMLSKSKSKDFCFLKDRIRRAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQ

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

6.2e-06

44.74

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Query:  AIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRI
        A+P YAMSCFR     C ++T+ +  FWW S +++R+I
Subjt:  AIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRI

Sequences

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CDS sequence

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ATTTCAGGTATCTCGATCACCCCTAATAGTCCAAGCATTTCTCATCTTTTCTTTGCATATGACAGCCTTGTTTTCTGTAAAGCTGACATTACTGAGTTGTATACGATCAA
GATGATTTTGTGTGAGTATGAAAGGGCTTCTGGTCAACAAATTAACTTTGAAAAGTCCGTTCTTTGGCTCTTACCAAATGTGAAAGAAGATTTCAAGAGCTATTTAAAAT
CCTTGATGGGAATGACTCTTGTCCCCCATTTAGGTGACTACTTAGGGCTACCAGCGATGCTTTCAAAGAGTAAGAGCAAAGATTTTTGTTTCCTTAAAGATAGAATCCGG
CGTGCTATCCAAGGGTGGAAAGAAAGCTTCTTTTCTTGTGGGGGGAAGGAGGTTTTGCTTAAAAGTGTAACACAAGCAATTCCTACATATGCCATGAGCTGTTTCCGTTT
TCACAATACTTTTTGTGCCGAAATGACTACAACATTGGCGAGATTTTGGTGGGGTTCAACTCAATCCAGAAGGAGAATCCAC

mRNA sequence

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Protein sequence

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ISGISITPNSPSISHLFFAYDSLVFCKADITELYTIKMILCEYERASGQQINFEKSVLWLLPNVKEDFKSYLKSLMGMTLVPHLGDYLGLPAMLSKSKSKDFCFLKDRIR
RAIQGWKESFFSCGGKEVLLKSVTQAIPTYAMSCFRFHNTFCAEMTTTLARFWWGSTQSRRRIH

MS012218 (gene) of Bitter gourd (TR) v1 genome