; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012219 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012219
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold797:525736..525981
RNA-Seq ExpressionMS012219
SyntenyMS012219
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.9e-2359.74Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC
        LGNAIG+ EDV+ +++ +C G  L V+VRFD+ KPL RG+K+N+DGPMG CW+PI+YERLPDF Y CG + H+ K C
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.1e-2667.09Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDS
        LGNAIG   DVDC+   +  G SL ++V  DITKPLRRG+KINIDGPMG CW+PI+YERLPDFCYFCG+IGH +  CD+
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.1e-1859.42Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGM
        LGNA+G  E+ DCD      G +L V+V  DI+KPLRRG+K+N+DGP+G  W+PI+YERLPDFCY CG+
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGM

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]4.2e-1546.25Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSN
        +GN IG+ E+VD +  E   GE L ++VR +I++PL RG+ + + G  GS W+   YERLP+FCY CG +GH  K C+ N
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSN

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]6.6e-1651.95Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC
        +GN+IGV E++D + DE   GE + +++  D+TKPL RG  IN+ G  GSCWV   YERLP FCY CG +GH  K C
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054819.2e-2459.74Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC
        LGNAIG+ EDV+ +++ +C G  L V+VRFD+ KPL RG+K+N+DGPMG CW+PI+YERLPDF Y CG + H+ K C
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC

A0A6J1DU55 uncharacterized protein LOC1110231352.0e-2667.09Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDS
        LGNAIG   DVDC+   +  G SL ++V  DITKPLRRG+KINIDGPMG CW+PI+YERLPDFCYFCG+IGH +  CD+
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDS

A0A6J1DX30 uncharacterized protein LOC1110248741.5e-1859.42Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGM
        LGNA+G  E+ DCD      G +L V+V  DI+KPLRRG+K+N+DGP+G  W+PI+YERLPDFCY CG+
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGM

A0A6P9EID8 uncharacterized protein LOC1183488562.1e-1546.25Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSN
        +GN IG+ E+VD +  E   GE L ++VR +I++PL RG+ + + G  GS W+   YERLP+FCY CG +GH  K C+ N
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSN

K3ZNG2 CCHC-type domain-containing protein3.5e-1548.05Show/hide
Query:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC
        +G+  G   +VD +SD+   G  L VKVR DI  PLRRG+ +++   +G  W P++YE LP+FCY CG+IGH+ KTC
Subjt:  LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01050.1 zinc ion binding;nucleic acid binding1.2e-0432.39Show/hide
Query:  VDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSNV
        VD ++  +  G    V +  ++ KPL+  V IN D         + YE L   C  CG+ GHL  +C  NV
Subjt:  VDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCGGCAATGCTATTGGGGTGTGTGAGGATGTTGACTGTGATTCTGACGAGTATTGTTTGGGGGAAAGTCTGACTGTCAAAGTGAGATTTGACATAACAAAACCCTTGAG
ACGAGGTGTGAAGATCAATATTGATGGTCCTATGGGTAGCTGTTGGGTTCCAATCAAGTATGAGCGTTTACCAGATTTTTGTTATTTCTGTGGGATGATTGGCCATCTAG
CTAAAACTTGTGATTCAAATGTTGAT
mRNA sequenceShow/hide mRNA sequence
CTCGGCAATGCTATTGGGGTGTGTGAGGATGTTGACTGTGATTCTGACGAGTATTGTTTGGGGGAAAGTCTGACTGTCAAAGTGAGATTTGACATAACAAAACCCTTGAG
ACGAGGTGTGAAGATCAATATTGATGGTCCTATGGGTAGCTGTTGGGTTCCAATCAAGTATGAGCGTTTACCAGATTTTTGTTATTTCTGTGGGATGATTGGCCATCTAG
CTAAAACTTGTGATTCAAATGTTGAT
Protein sequenceShow/hide protein sequence
LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSNVD