; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012245 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012245
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCBS domain-containing protein CBSX1, chloroplastic-like
Genome locationscaffold797:781696..783060
RNA-Seq ExpressionMS012245
SyntenyMS012245
Gene Ontology termsNA
InterPro domainsIPR000644 - CBS domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06762.1 CBS domain-containing protein CBSX2 [Cucumis melo var. makuwa]4.0e-5871.74Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGF
        MASISTPYV P+   NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R +GSYTVGDFMTKKGNL V+KPST+I+EALEVLVE  +SGF
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGF

Query:  PVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        PVVD DWKLVGVVSDYDLLA+DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + ENAAR
Subjt:  PVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

XP_004136971.1 CBS domain-containing protein CBSX2, chloroplastic [Cucumis sativus]1.1e-5871.11Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD
        MASISTPYV P++ PNSR    + R       +  RSP V  A SGHR+++S P R+GSY VGDFMTKKGNLQV+KPST+++EALEVLVE  LSGFPVVD
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD

Query:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
         DWKLVGVVSDYDLLA+DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGEV+GDLMTPAPLVV ET + ENAAR
Subjt:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

XP_008455519.1 PREDICTED: CBS domain-containing protein CBSX2, chloroplastic [Cucumis melo]1.0e-5372.19Show/hide
Query:  NSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSD
        NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R +GSYTVGDFMTKKGNL V+KPST+I+EALEVLVE  +SGFPVVD DWKLVGVVSD
Subjt:  NSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSD

Query:  YDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        YDLLA+DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + ENAAR
Subjt:  YDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

XP_022155650.1 CBS domain-containing protein CBSX1, chloroplastic-like [Momordica charantia]2.9e-93100Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD
        MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD

Query:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
Subjt:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

XP_038888405.1 CBS domain-containing protein CBSX1, chloroplastic-like [Benincasa hispida]9.2e-6375.27Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAA-----FSPSS-NRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLS
        MASISTPYV P++LPNSR LQ +FR + A      SPSS  RSP+V  A SGHR+A+S+  R GSYTVGDFMTKKGNLQV+KPST++DEALEVLVE  LS
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAA-----FSPSS-NRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLS

Query:  GFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        GFPVVD DWKLVGVVSDYDLLA+DSISGV  GD E NIFPDVN SWKSFK IQKL+SK NGEV+GDLMTPAPLVVRET +LE+AAR
Subjt:  GFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

TrEMBL top hitse value%identityAlignment
A0A0A0K7X9 Uncharacterized protein5.1e-5971.11Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD
        MASISTPYV P++ PNSR    + R       +  RSP V  A SGHR+++S P R+GSY VGDFMTKKGNLQV+KPST+++EALEVLVE  LSGFPVVD
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD

Query:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
         DWKLVGVVSDYDLLA+DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGEV+GDLMTPAPLVV ET + ENAAR
Subjt:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

A0A1S3C189 CBS domain-containing protein CBSX2, chloroplastic4.9e-5472.19Show/hide
Query:  NSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSD
        NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R +GSYTVGDFMTKKGNL V+KPST+I+EALEVLVE  +SGFPVVD DWKLVGVVSD
Subjt:  NSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSD

Query:  YDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        YDLLA+DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + ENAAR
Subjt:  YDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

A0A5D3C646 CBS domain-containing protein CBSX21.9e-5871.74Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGF
        MASISTPYV P+   NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R +GSYTVGDFMTKKGNL V+KPST+I+EALEVLVE  +SGF
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGF

Query:  PVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        PVVD DWKLVGVVSDYDLLA+DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + ENAAR
Subjt:  PVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

A0A6J1DN09 CBS domain-containing protein CBSX1, chloroplastic-like1.4e-93100Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD
        MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVD

Query:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
Subjt:  GDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

A0A6J1EM78 CBS domain-containing protein CBSX2, chloroplastic1.9e-5366.31Show/hide
Query:  MASISTPYVPPALLPNSRPLQRRFRSSAAF-------SPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKL
        MASIST   P ++LPNSR   R+ +S A         SPSS   P  V      R   S    S +Y VGDFMTKKGNLQV+KPSTT+D+ALEVLVE  L
Subjt:  MASISTPYVPPALLPNSRPLQRRFRSSAAF-------SPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKL

Query:  SGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        SGFPV+D DWKLVGVVSDYDLLA+ +ISGVGGG  ETNIFPDVN SWK FKEIQKL+SKTNGEV+ DLMTPAPLVVRE T+LE+AAR
Subjt:  SGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

SwissProt top hitse value%identityAlignment
O23193 CBS domain-containing protein CBSX1, chloroplastic4.6e-4958.43Show/hide
Query:  STPYVPPALLPNSRPLQ--RRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGD
        S+P  P  LLP    +Q   +F  S +F PS +R PS  SA     + NS+  RSG YTVG+FMTKK +L VVKP+TT+DEALE+LVEN+++GFPV+D D
Subjt:  STPYVPPALLPNSRPLQ--RRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGD

Query:  WKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        WKLVG+VSDYDLLA+DSIS  G G  E ++FP+V+ +WK+F  +QKL+SKTNG+++GDLMTPAPLVV E T+LE+AA+
Subjt:  WKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

O67820 Inosine-5'-monophosphate dehydrogenase4.5e-0445.45Show/hide
Query:  NLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDL
        N   VKP T + EAL+++ + K+SG PVVD + KL+G++++ DL
Subjt:  NLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDL

Q9C5D0 CBS domain-containing protein CBSX2, chloroplastic8.1e-4660.49Show/hide
Query:  PLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVD
        PL  R RSS  FSPS   S    +  S +   NS P+++G YTVGDFMT + NL VVKPST++D+ALE+LVE K++G PV+D +W LVGVVSDYDLLA+D
Subjt:  PLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVD

Query:  SISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        SISG    D  TN+FPDV+ +WK+F E+QKL+SKT G+V+GDLMTP+PLVVR++T+LE+AAR
Subjt:  SISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

Arabidopsis top hitse value%identityAlignment
AT4G34120.1 Cystathionine beta-synthase (CBS) family protein5.8e-4760.49Show/hide
Query:  PLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVD
        PL  R RSS  FSPS   S    +  S +   NS P+++G YTVGDFMT + NL VVKPST++D+ALE+LVE K++G PV+D +W LVGVVSDYDLLA+D
Subjt:  PLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVD

Query:  SISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        SISG    D  TN+FPDV+ +WK+F E+QKL+SKT G+V+GDLMTP+PLVVR++T+LE+AAR
Subjt:  SISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

AT4G36910.1 Cystathionine beta-synthase (CBS) family protein3.3e-5058.43Show/hide
Query:  STPYVPPALLPNSRPLQ--RRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGD
        S+P  P  LLP    +Q   +F  S +F PS +R PS  SA     + NS+  RSG YTVG+FMTKK +L VVKP+TT+DEALE+LVEN+++GFPV+D D
Subjt:  STPYVPPALLPNSRPLQ--RRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGD

Query:  WKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
        WKLVG+VSDYDLLA+DSIS  G G  E ++FP+V+ +WK+F  +QKL+SKTNG+++GDLMTPAPLVV E T+LE+AA+
Subjt:  WKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGATTTCCACGCCCTATGTTCCTCCCGCGCTTCTTCCTAATTCACGGCCGTTGCAGAGGCGTTTCCGATCCTCCGCCGCCTTTTCACCGTCATCGAATCGGTC
TCCGTCCGTCGTTTCGGCACTTTCCGGCCACCGCATCGCCAATTCTGCGCCGTCAAGAAGTGGATCGTATACGGTTGGGGATTTCATGACGAAGAAGGGGAATCTGCAGG
TCGTGAAGCCTTCTACGACCATCGACGAAGCATTGGAGGTTCTTGTAGAGAACAAATTATCTGGGTTCCCTGTAGTTGACGGCGACTGGAAACTGGTGGGTGTTGTTTCA
GATTACGACTTGTTAGCTGTGGACTCCATTTCAGGTGTAGGTGGTGGGGACTGGGAGACTAATATATTTCCAGATGTCAACATTAGCTGGAAAAGCTTCAAGGAGATACA
GAAATTGGTAAGCAAGACCAACGGGGAAGTTATTGGAGATTTGATGACGCCTGCTCCATTGGTTGTTCGTGAAACCACAGACTTGGAAAATGCTGCCAGG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCGATTTCCACGCCCTATGTTCCTCCCGCGCTTCTTCCTAATTCACGGCCGTTGCAGAGGCGTTTCCGATCCTCCGCCGCCTTTTCACCGTCATCGAATCGGTC
TCCGTCCGTCGTTTCGGCACTTTCCGGCCACCGCATCGCCAATTCTGCGCCGTCAAGAAGTGGATCGTATACGGTTGGGGATTTCATGACGAAGAAGGGGAATCTGCAGG
TCGTGAAGCCTTCTACGACCATCGACGAAGCATTGGAGGTTCTTGTAGAGAACAAATTATCTGGGTTCCCTGTAGTTGACGGCGACTGGAAACTGGTGGGTGTTGTTTCA
GATTACGACTTGTTAGCTGTGGACTCCATTTCAGGTGTAGGTGGTGGGGACTGGGAGACTAATATATTTCCAGATGTCAACATTAGCTGGAAAAGCTTCAAGGAGATACA
GAAATTGGTAAGCAAGACCAACGGGGAAGTTATTGGAGATTTGATGACGCCTGCTCCATTGGTTGTTCGTGAAACCACAGACTTGGAAAATGCTGCCAGG
Protein sequenceShow/hide protein sequence
MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVS
DYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR