; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012255 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012255
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncold-regulated protein 27
Genome locationscaffold797:862096..864413
RNA-Seq ExpressionMS012255
SyntenyMS012255
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031301.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa]2.5e-6673.37Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHRSYLDSLEASFVQ LHQ+R + A +SKQK RRK I  + SSSELMVLQDASWQKANIGRNDP LD+TA+SP AILEDLWINHFPSAGKQC+
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQ
        LE PDLLEECGS SDRRH+R+M N CG AR+SQQ      +S  I+TEVSDQNFVDN PGELSGG+  AKRLK+A++    N Q
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQ

XP_004136978.1 cold-regulated protein 27 isoform X1 [Cucumis sativus]2.1e-6572.43Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHR YLDSLEASFVQ+LHQ+R + A + KQK RRK I P+ISSSELMVLQDASWQKANIGRNDP LD+TA+SP AILEDLWINHFPSAGKQC+
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV
        LE PDLLEEC S SDRRH+RYM N C  AR+SQ       +S  I+TEVSDQNFVDN PGELS G+  AKRLK+A++D S + QV
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV

XP_008454952.1 PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]8.6e-6773.51Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHRSYLDSLEASFVQ LHQ+R + A +SKQK RRK I  + SSSELMVLQDASWQKANIGRNDP LD+TA+SP AILEDLWINHFPSAGKQC+
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV
        LE PDLLEECGS SDRRH+R+M N CG AR+SQQ      +S  I+TEVSDQNFVDN PGELSGG+  AKRLK+A++    N QV
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV

XP_022135587.1 uncharacterized protein LOC111007509, partial [Momordica charantia]8.9e-7278.24Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSE+                                    +H  S  KQCN
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT
        LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT

XP_023553838.1 uncharacterized protein LOC111811294 isoform X1 [Cucurbita pepo subsp. pepo]4.3e-6672.19Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHR +LDSLEASFVQ+LH+YRHLRA +SKQK RRK I PNISSSE +VLQDASWQKANIGR DP L +TA+SP AILED+WINHFPSAGK C 
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKL
        LE  D+LEECGS SDRRH+R   N C  ARSSQQI +   DS  I TEVSDQNFVD HPGELS G    KRLK+A++DSS N++VKL
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKL

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z2 Uncharacterized protein1.0e-6572.43Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHR YLDSLEASFVQ+LHQ+R + A + KQK RRK I P+ISSSELMVLQDASWQKANIGRNDP LD+TA+SP AILEDLWINHFPSAGKQC+
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV
        LE PDLLEEC S SDRRH+RYM N C  AR+SQ       +S  I+TEVSDQNFVDN PGELS G+  AKRLK+A++D S + QV
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV

A0A1S3BZU8 uncharacterized protein LOC103495241 isoform X14.2e-6773.51Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHRSYLDSLEASFVQ LHQ+R + A +SKQK RRK I  + SSSELMVLQDASWQKANIGRNDP LD+TA+SP AILEDLWINHFPSAGKQC+
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV
        LE PDLLEECGS SDRRH+R+M N CG AR+SQQ      +S  I+TEVSDQNFVDN PGELSGG+  AKRLK+A++    N QV
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQV

A0A5D3C4A3 Cold regulated protein 27, putative isoform 21.2e-6673.37Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WTDEKHRSYLDSLEASFVQ LHQ+R + A +SKQK RRK I  + SSSELMVLQDASWQKANIGRNDP LD+TA+SP AILEDLWINHFPSAGKQC+
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQ
        LE PDLLEECGS SDRRH+R+M N CG AR+SQQ      +S  I+TEVSDQNFVDN PGELSGG+  AKRLK+A++    N Q
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQ

A0A6J1C346 uncharacterized protein LOC1110075094.3e-7278.24Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSE+                                    +H  S  KQCN
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT
        LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT

A0A6J1GKR5 uncharacterized protein LOC111454842 isoform X11.8e-6571.66Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN
        QT WT+EKHR +LDSLEASFVQ+LH+YRHLRA +SKQK RRK I PNISSSE MVLQDASWQKAN+GR DP LD+TA+SP AILED+WINHFPSAG QC 
Subjt:  QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCN

Query:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKL
        LE  D+LEECGS SDR H+R   N    ARSSQQI     DS  I+TEVSDQNFVD HPGELS G    KRLK+A++DSS NN+VKL
Subjt:  LEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKL

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 272.5e-0829.84Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ
        +T WT+EKH  YL S+EASFV +L+     L  + +  ++ R       S  +  VL D  WQK N+ + +  ++ R   +    L   WI H+    K 
Subjt:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ

Query:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAIL---TEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV
           + P   E         + +      G A S +Q+S+ S D   I     EVSDQNFV+     + G   ++K++K    ++SSS +QV
Subjt:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAIL---TEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV

Q8L983 Cold-regulated protein 282.1e-0741.56Show/hide
Query:  TVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSK-QKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTA
        T WT+EKH SYLD LE+SFV++L  Y  L   T +  +TR  Q   + S+ +  VLQ+  WQK N G+    L+ ++
Subjt:  TVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSK-QKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTA

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)1.5e-0841.56Show/hide
Query:  TVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSK-QKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTA
        T WT+EKH SYLD LE+SFV++L  Y  L   T +  +TR  Q   + S+ +  VLQ+  WQK N G+    L+ ++
Subjt:  TVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSK-QKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTA

AT4G33980.2 FUNCTIONS IN: molecular_function unknown1.5e-0841.56Show/hide
Query:  TVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSK-QKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTA
        T WT+EKH SYLD LE+SFV++L  Y  L   T +  +TR  Q   + S+ +  VLQ+  WQK N G+    L+ ++
Subjt:  TVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSK-QKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTA

AT5G42900.1 cold regulated gene 271.8e-0929.84Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ
        +T WT+EKH  YL S+EASFV +L+     L  + +  ++ R       S  +  VL D  WQK N+ + +  ++ R   +    L   WI H+    K 
Subjt:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ

Query:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAIL---TEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV
           + P   E         + +      G A S +Q+S+ S D   I     EVSDQNFV+     + G   ++K++K    ++SSS +QV
Subjt:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAIL---TEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV

AT5G42900.2 cold regulated gene 271.8e-0929.84Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ
        +T WT+EKH  YL S+EASFV +L+     L  + +  ++ R       S  +  VL D  WQK N+ + +  ++ R   +    L   WI H+    K 
Subjt:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ

Query:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAIL---TEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV
           + P   E         + +      G A S +Q+S+ S D   I     EVSDQNFV+     + G   ++K++K    ++SSS +QV
Subjt:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAIL---TEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV

AT5G42900.3 cold regulated gene 272.7e-1029.47Show/hide
Query:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ
        +T WT+EKH  YL S+EASFV +L+     L  + +  ++ R       S  +  VL D  WQK N+ + +  ++ R   +    L   WI H+    K 
Subjt:  QTVWTDEKHRSYLDSLEASFVQELH-QYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLD-RTANSPAAILEDLWINHFPSAGKQ

Query:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQIS--TRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV
           + P   E         + +      G A S +Q+S  +R  D +++  EVSDQNFV+     + G   ++K++K    ++SSS +QV
Subjt:  CNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQIS--TRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRA-TTDSSSNNQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAACAGTTTGGACAGATGAGAAGCACAGATCATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGAGTTGCATCAATATAGGCACTTGCGTGCTTCGACCTCGAAACA
GAAAACACGTAGGAAGCAGATCACGCCTAATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTCATTGG
ATAGGACTGCCAATTCCCCTGCTGCTATTTTAGAGGATCTTTGGATAAATCATTTTCCTTCTGCAGGAAAACAATGTAATCTGGAAGCACCTGATCTCCTTGAAGAATGT
GGAAGTTATAGTGATAGGAGACACTTAAGGTACATGGCAAACCCCTGTGGATTTGCAAGAAGTTCACAGCAGATCTCTACACGCAGTGGTGATTCTGTTGCAATTCTTAC
AGAAGTTTCAGATCAAAACTTTGTGGATAATCATCCAGGAGAGTTGTCTGGTGGCATATCTAATGCAAAAAGGTTAAAGAGAGCTACTACTGATTCTTCGAGCAACAACC
AAGTAAAACTACTCTTTGGAAAACTAACC
mRNA sequenceShow/hide mRNA sequence
CAAACAGTTTGGACAGATGAGAAGCACAGATCATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGAGTTGCATCAATATAGGCACTTGCGTGCTTCGACCTCGAAACA
GAAAACACGTAGGAAGCAGATCACGCCTAATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTCATTGG
ATAGGACTGCCAATTCCCCTGCTGCTATTTTAGAGGATCTTTGGATAAATCATTTTCCTTCTGCAGGAAAACAATGTAATCTGGAAGCACCTGATCTCCTTGAAGAATGT
GGAAGTTATAGTGATAGGAGACACTTAAGGTACATGGCAAACCCCTGTGGATTTGCAAGAAGTTCACAGCAGATCTCTACACGCAGTGGTGATTCTGTTGCAATTCTTAC
AGAAGTTTCAGATCAAAACTTTGTGGATAATCATCCAGGAGAGTTGTCTGGTGGCATATCTAATGCAAAAAGGTTAAAGAGAGCTACTACTGATTCTTCGAGCAACAACC
AAGTAAAACTACTCTTTGGAAAACTAACC
Protein sequenceShow/hide protein sequence
QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCNLEAPDLLEEC
GSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT