CuGenDBv2

Gene ID	MS012275
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AAA domain-containing protein
Genome location	scaffold797:1114824..1115327
RNA-Seq Expression	MS012275
Synteny	MS012275
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016020 - membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0008237 - metallopeptidase activity (molecular function) GO:0043167 - ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578519.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-36

59.09

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLN---LFIVESSVNLGVDYLVTVKLGHLMNDKMPHLGSGRNNN-----LGIKC-PRLRLLSIIRL
        RNFSCSSV LP +A  +T  N   +LLCS +FR++ N    F   S            KL H+MNDKMP LGS R NN      G++  PRLRLLS  RL
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLN---LFIVESSVNLGVDYLVTVKLGHLMNDKMPHLGSGRNNN-----LGIKC-PRLRLLSIIRL

Query:  KTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        +TVSVRSA+NNV TF RKNVRKV+ SASV IVLGLCY FLK+TA PP K+VPYS FI+SLQNGTVTKV LE   +R
Subjt:  KTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

XP_008459447.1 PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic [Cucumis melo]

1.4e-36

58.43

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLG------VDYLVTVKLGHLMNDKMPHLGSGRNN----NLGIKC-PRLRLLSII
        +NFS +S+ LPS+ F +T R+   EL+CS RFR+M++     SS+           +  + KLG LMNDKMPHLG   NN    N G++  PRLRLLS  
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLG------VDYLVTVKLGHLMNDKMPHLGSGRNN----NLGIKC-PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RLKTVSVRS LNNV TF RKNVRKVT SASVSIVL +CY FLKITA  P K+VPYS FI+SLQNGTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

XP_022134380.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic isoform X1 [Momordica charantia]

1.3e-50

70.79

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII
        RN SCSSVALPSVAF+ATCRNF+SELLCS RF+LMLN     S + L              KLGHLMNDKMPHLGS RNNNL  K      PRLRLLS I
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RL+TVSVRSALNNV TFFRKN+RKVTFSASVSIVLGLCY FL+ITA PP KSVPYS F++SLQNGTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

XP_022134382.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic isoform X3 [Momordica charantia]

1.3e-50

70.79

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII
        RN SCSSVALPSVAF+ATCRNF+SELLCS RF+LMLN     S + L              KLGHLMNDKMPHLGS RNNNL  K      PRLRLLS I
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RL+TVSVRSALNNV TFFRKN+RKVTFSASVSIVLGLCY FL+ITA PP KSVPYS F++SLQNGTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

XP_038890854.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic [Benincasa hispida]

1.0e-36

59.55

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLN----LFIVESS--VNLGVDYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII
        +N   +S++LPS+AF +T RN   ELL S RFR+++N       +E S        +    KLG+LMNDKMPHLGS RNNNL         PRLRLLS  
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLN----LFIVESS--VNLGVDYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RLKT+SVRSALNNV TF R+NVRKVT SASVSIVLGL Y FLKITA PP K+VPYS FI+SLQNGTVT V LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSL6 AAA domain-containing protein

1.5e-36

57.87

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLG------VDYLVTVKLGHLMNDKMPHLGSGRNNNL----GIKC-PRLRLLSII
        ++F+ +S++LPS+ F +T RN   ELLCS RFR+ +N     SS+           +    KLG+L+NDKM HLG   NNNL    G++  PRLRLLS  
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLG------VDYLVTVKLGHLMNDKMPHLGSGRNNNL----GIKC-PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RLKTVSVRS LNNV TF RKNVRKVT SASVSIVL +CY FLKITA PP K+VPYS FI+SLQ+GTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

A0A1S3C9P6 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic

6.6e-37

58.43

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLG------VDYLVTVKLGHLMNDKMPHLGSGRNN----NLGIKC-PRLRLLSII
        +NFS +S+ LPS+ F +T R+   EL+CS RFR+M++     SS+           +  + KLG LMNDKMPHLG   NN    N G++  PRLRLLS  
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLG------VDYLVTVKLGHLMNDKMPHLGSGRNN----NLGIKC-PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RLKTVSVRS LNNV TF RKNVRKVT SASVSIVL +CY FLKITA  P K+VPYS FI+SLQNGTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

A0A6J1BY57 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic isoform X1

6.1e-51

70.79

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII
        RN SCSSVALPSVAF+ATCRNF+SELLCS RF+LMLN     S + L              KLGHLMNDKMPHLGS RNNNL  K      PRLRLLS I
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RL+TVSVRSALNNV TFFRKN+RKVTFSASVSIVLGLCY FL+ITA PP KSVPYS F++SLQNGTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

A0A6J1BZG7 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic isoform X3

6.1e-51

70.79

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII
        RN SCSSVALPSVAF+ATCRNF+SELLCS RF+LMLN     S + L              KLGHLMNDKMPHLGS RNNNL  K      PRLRLLS I
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGV------DYLVTVKLGHLMNDKMPHLGSGRNNNLGIKC-----PRLRLLSII

Query:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        RL+TVSVRSALNNV TFFRKN+RKVTFSASVSIVLGLCY FL+ITA PP KSVPYS F++SLQNGTVTKV LE   +R
Subjt:  RLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

A0A6J1K1R9 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic

1.9e-36

57.95

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Query:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLN---LFIVESSVNLGVDYLVTVKLGHLMNDKMPHLGSGRNNN-----LGIKC-PRLRLLSIIRL
        RNFSCSSV LP +A  +T  N   +LLC+ +FR++ N    F   S            KL H+MNDKMP LG  R NN     +G++  PRLRLLS  RL
Subjt:  RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLN---LFIVESSVNLGVDYLVTVKLGHLMNDKMPHLGSGRNNN-----LGIKC-PRLRLLSIIRL

Query:  KTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        +TVSVRSA+NNV TF RKNVRKV+ SASV IVLGLCY FLK+TA PP K+VPYS FI+SLQNGTVTKV LE   +R
Subjt:  KTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

SwissProt top hits

e value

%identity

Alignment

Q9M895 Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic

7.1e-12

38.17

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Query:  SVNLGVDYLVTVKLGHLMNDKMPHLG-SGRNN------NLGIKCPRLRLLSIIRLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-
        S N  +  LVT   G    DK   +G +GRN       +L ++ PRLRL+  +RL     R+++ +   F +KN+++V  S  V+++ GLCY FL++TA 
Subjt:  SVNLGVDYLVTVKLGHLMNDKMPHLG-SGRNN------NLGIKCPRLRLLSIIRLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-

Query:  PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        P P  VPYS F+++L+ G+V+KV LE   +R
Subjt:  PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

Arabidopsis top hits

e value

%identity

Alignment

AT3G02450.1 cell division protein ftsH, putative

5.0e-13

38.17

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Query:  SVNLGVDYLVTVKLGHLMNDKMPHLG-SGRNN------NLGIKCPRLRLLSIIRLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-
        S N  +  LVT   G    DK   +G +GRN       +L ++ PRLRL+  +RL     R+++ +   F +KN+++V  S  V+++ GLCY FL++TA 
Subjt:  SVNLGVDYLVTVKLGHLMNDKMPHLG-SGRNN------NLGIKCPRLRLLSIIRLKTVSVRSALNNVVTFFRKNVRKVTFSASVSIVLGLCYFFLKITA-

Query:  PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR
        P P  VPYS F+++L+ G+V+KV LE   +R
Subjt:  PPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

Sequences

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CDS sequence

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AGAAACTTTTCTTGTAGTTCCGTTGCTCTTCCTTCTGTGGCGTTTTCTGCTACGTGCAGAAATTTTCATTCTGAGTTGCTATGCAGTCGTAGATTTCGGTTAATGTTAAA
TTTGTTTATAGTTGAGAGTTCTGTAAATCTCGGCGTGGATTATCTCGTAACAGTAAAACTTGGGCATTTGATGAATGATAAAATGCCCCATCTGGGTAGTGGAAGAAACA
ACAATTTGGGAATAAAATGCCCGAGGTTGAGATTGTTGTCTATAATAAGATTGAAAACAGTTTCTGTTAGGTCAGCTCTAAACAATGTAGTGACATTTTTTAGGAAGAAT
GTTAGGAAGGTGACCTTTTCTGCTTCAGTTTCCATTGTTTTGGGGCTATGCTATTTTTTCCTGAAAATAACAGCACCACCACCTAAAAGCGTTCCATATTCAGGTTTCAT
TTCAAGCCTTCAGAATGGAACTGTCACCAAAGTTGATCTAGAAGTCACAATGAAGAGG

mRNA sequence

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Protein sequence

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RNFSCSSVALPSVAFSATCRNFHSELLCSRRFRLMLNLFIVESSVNLGVDYLVTVKLGHLMNDKMPHLGSGRNNNLGIKCPRLRLLSIIRLKTVSVRSALNNVVTFFRKN
VRKVTFSASVSIVLGLCYFFLKITAPPPKSVPYSGFISSLQNGTVTKVDLEVTMKR

MS012275 (gene) of Bitter gourd (TR) v1 genome