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MS012298 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012298
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpalmitoyl-protein thioesterase 1-like
Genome locationscaffold797:1301667..1303134
RNA-Seq ExpressionMS012298
SyntenyMS012298
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0016790 - thiolester hydrolase activity (molecular function)
InterPro domainsIPR029058 - Alpha/Beta hydrolase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158107.1 palmitoyl-protein thioesterase 1-like [Momordica charantia]5.5e-4470.37Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+ YLK SKFLPKLNNER +++N  YKERFSSLNKLVLLMNE+++ LIP+E+A FGYY+DGSTD +V+PA ET LYKEDWIGL+SL+E GKV+   VPG 
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK
        HA+  DE+++KFVVPYLVDDAA  AL SAI TKLK
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK

XP_022158115.1 palmitoyl-protein thioesterase 1-like [Momordica charantia]1.4e-3665.55Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+EYLK S+FLPKLNNER  E+N  YKERFSSL+ LVLL NE+++ LIP+E+AWFGYY+DGST+  ++PA E +LYKEDWIGL+SLNE G+V   +VPG 
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVD
        HA  +DE++S+FVVP+LVD
Subjt:  HANLTDESMSKFVVPYLVD

XP_022158124.1 palmitoyl-protein thioesterase 1-like, partial [Momordica charantia]1.6e-5986.67Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+EY+K+SKFLPKLNNER +E+NV Y +RFSSLNKLVLLMNE+DS L PRETAWFGYY DGSTDR+VVPATETNLYKEDWIGLK LNESGKVIT KVPGD
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK
        HANL DESMS FVVPYLVDDAADLALTSAITTKLK
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK

XP_022158133.1 palmitoyl-protein thioesterase 1-like [Momordica charantia]7.6e-6293.33Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        IQEYLK+SKFLPKLNNE QDEKNVVYKERFSSLNKLVLLM  DDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKE+WIGLK LNESGKVIT KVPGD
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK
        HANL DESMS FVVPYLVDDAADLALTSAITTKLK
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK

XP_022159495.1 palmitoyl-protein thioesterase 1-like [Momordica charantia]3.9e-3460.33Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+EYLK S+ LPKLNNE    +N  Y +RFSSL  LVLLMNE D F  PRE++WFGYY+DGS  + ++PA ET LYKEDWIGLK LNESG+V  LKVPG+
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDA
        HA  TD+ + +FV P+L++++
Subjt:  HANLTDESMSKFVVPYLVDDA

TrEMBL top hitse value%identityAlignment
A0A6J1DUW7 palmitoyl-protein thioesterase 1-like7.0e-3765.55Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+EYLK S+FLPKLNNER  E+N  YKERFSSL+ LVLL NE+++ LIP+E+AWFGYY+DGST+  ++PA E +LYKEDWIGL+SLNE G+V   +VPG 
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVD
        HA  +DE++S+FVVP+LVD
Subjt:  HANLTDESMSKFVVPYLVD

A0A6J1DV90 palmitoyl-protein thioesterase 1-like3.7e-6293.33Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        IQEYLK+SKFLPKLNNE QDEKNVVYKERFSSLNKLVLLM  DDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKE+WIGLK LNESGKVIT KVPGD
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK
        HANL DESMS FVVPYLVDDAADLALTSAITTKLK
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK

A0A6J1DWB7 palmitoyl-protein thioesterase 1-like2.7e-4470.37Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+ YLK SKFLPKLNNER +++N  YKERFSSLNKLVLLMNE+++ LIP+E+A FGYY+DGSTD +V+PA ET LYKEDWIGL+SL+E GKV+   VPG 
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK
        HA+  DE+++KFVVPYLVDDAA  AL SAI TKLK
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK

A0A6J1DYG9 palmitoyl-protein thioesterase 1-like7.7e-6086.67Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+EY+K+SKFLPKLNNER +E+NV Y +RFSSLNKLVLLMNE+DS L PRETAWFGYY DGSTDR+VVPATETNLYKEDWIGLK LNESGKVIT KVPGD
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK
        HANL DESMS FVVPYLVDDAADLALTSAITTKLK
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTSAITTKLK

A0A6J1DYX2 palmitoyl-protein thioesterase 1-like1.9e-3460.33Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I+EYLK S+ LPKLNNE    +N  Y +RFSSL  LVLLMNE D F  PRE++WFGYY+DGS  + ++PA ET LYKEDWIGLK LNESG+V  LKVPG+
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDA
        HA  TD+ + +FV P+L++++
Subjt:  HANLTDESMSKFVVPYLVDDA

SwissProt top hitse value%identityAlignment
P45479 Palmitoyl-protein thioesterase 13.3e-1535.96Show/hide
Query:  YLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHAN
        Y   S FL  +N ER    N  YKE   +L K V++   +DS + P ++ WFG+Y  G   ++ +P  ET LY ED +GLK ++++GK++ L   GDH  
Subjt:  YLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHAN

Query:  LTDESMSKFVVPYL
        ++ E  +  ++P+L
Subjt:  LTDESMSKFVVPYL

P50897 Palmitoyl-protein thioesterase 13.6e-1434.21Show/hide
Query:  YLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHAN
        Y   S FL  +N ER    N  YK+   +L K V++   +DS + P ++ WFG+Y  G   ++ +P  ET+LY +D +GLK ++ +G+++ L   GDH  
Subjt:  YLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHAN

Query:  LTDESMSKFVVPYL
        L++E     ++P+L
Subjt:  LTDESMSKFVVPYL

Q20390 Palmitoyl-protein thioesterase 13.7e-1944.23Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        ++EY K S FL  +NNE  +  N  YK    SL  LVL+    D  ++P++++WFG+Y+DG  D  ++P  ET+LYKED IGLK L+ESG++  + V GD
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANL
        H  +
Subjt:  HANL

Q54CM0 Palmitoyl-protein thioesterase 37.8e-1739.34Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I +YL+ S FL  +NNE Q  KN  YKE  + LN +VL  + +D  +IP+E+ WF +Y DGS   +VVP  +   Y EDW+GL++L+ES ++        
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSK-----FVVPYL
        H +   E   K     F +PYL
Subjt:  HANLTDESMSK-----FVVPYL

Q8HXW6 Palmitoyl-protein thioesterase 13.6e-1434.21Show/hide
Query:  YLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHAN
        Y   S FL  +N ER    N  YK+   +L K V++   +DS + P ++ WFG+Y  G   ++ +P  ET+LY +D +GLK ++ +G+++ L   GDH  
Subjt:  YLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHAN

Query:  LTDESMSKFVVPYL
        L++E     ++P+L
Subjt:  LTDESMSKFVVPYL

Arabidopsis top hitse value%identityAlignment
AT3G60340.1 alpha/beta-Hydrolases superfamily protein2.5e-3151.56Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I  Y++  +FLPKLNNE    KN  YKERFSSL  LVL+M E D+ LIP+ET+WFGYY DGS  + ++P  ET LY EDWIGL++L+E+GKV  + V G+
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDDAADLALTS
        H  ++   M K +VPYL D ++  + T+
Subjt:  HANLTDESMSKFVVPYLVDDAADLALTS

AT4G17470.1 alpha/beta-Hydrolases superfamily protein1.3e-3554.92Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDG-STDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPG
        I+ YL+ SK+LPKLNNER  EKN  +K+RF+SL  LVL+M ++D+ L+PRET+WFGYY DG S+   V+P  +T LY EDWIGLK+L+++GKV  + VPG
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDG-STDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPG

Query:  DHANLTDESMSKFVVPYLVDDA
         H  +T+E + K+VVPYL +++
Subjt:  DHANLTDESMSKFVVPYLVDDA

AT4G17470.2 alpha/beta-Hydrolases superfamily protein1.3e-3554.92Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDG-STDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPG
        I+ YL+ SK+LPKLNNER  EKN  +K+RF+SL  LVL+M ++D+ L+PRET+WFGYY DG S+   V+P  +T LY EDWIGLK+L+++GKV  + VPG
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDG-STDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPG

Query:  DHANLTDESMSKFVVPYLVDDA
         H  +T+E + K+VVPYL +++
Subjt:  DHANLTDESMSKFVVPYLVDDA

AT4G17470.3 alpha/beta-Hydrolases superfamily protein1.3e-3554.92Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDG-STDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPG
        I+ YL+ SK+LPKLNNER  EKN  +K+RF+SL  LVL+M ++D+ L+PRET+WFGYY DG S+   V+P  +T LY EDWIGLK+L+++GKV  + VPG
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDG-STDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPG

Query:  DHANLTDESMSKFVVPYLVDDA
         H  +T+E + K+VVPYL +++
Subjt:  DHANLTDESMSKFVVPYLVDDA

AT4G17483.1 alpha/beta-Hydrolases superfamily protein4.2e-3455.83Show/hide
Query:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD
        I +YL+ SK+LPKLNNER DE+N  +K+RF++L+ LVL+M E D+ LIP+ETAWFGYYED   D  ++ A +T LY+EDWIGLK+L+ +GKV    V GD
Subjt:  IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGD

Query:  HANLTDESMSKFVVPYLVDD
        H +++DE + +FVVPYL+ +
Subjt:  HANLTDESMSKFVVPYLVDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCAGGAGTATTTGAAGAGTTCTAAATTCCTTCCAAAGCTCAATAACGAACGCCAAGACGAGAAGAACGTAGTTTACAAGGAGCGTTTTAGTAGCTTGAACAAATTGGT
GTTGCTCATGAATGAGGACGATAGTTTCTTAATTCCGAGGGAAACTGCATGGTTTGGATACTATGAGGATGGGAGCACTGATCGTAAAGTTGTACCTGCAACAGAGACAA
ATCTGTATAAAGAGGATTGGATTGGGTTGAAGAGTTTGAATGAGAGTGGAAAAGTGATAACTTTGAAAGTGCCAGGAGATCATGCTAATTTAACTGATGAAAGTATGAGT
AAATTTGTGGTGCCATACTTGGTGGATGATGCAGCAGACTTGGCCCTAACCTCTGCAATAACAACAAAACTCAAA
mRNA sequenceShow/hide mRNA sequence
ATTCAGGAGTATTTGAAGAGTTCTAAATTCCTTCCAAAGCTCAATAACGAACGCCAAGACGAGAAGAACGTAGTTTACAAGGAGCGTTTTAGTAGCTTGAACAAATTGGT
GTTGCTCATGAATGAGGACGATAGTTTCTTAATTCCGAGGGAAACTGCATGGTTTGGATACTATGAGGATGGGAGCACTGATCGTAAAGTTGTACCTGCAACAGAGACAA
ATCTGTATAAAGAGGATTGGATTGGGTTGAAGAGTTTGAATGAGAGTGGAAAAGTGATAACTTTGAAAGTGCCAGGAGATCATGCTAATTTAACTGATGAAAGTATGAGT
AAATTTGTGGTGCCATACTTGGTGGATGATGCAGCAGACTTGGCCCTAACCTCTGCAATAACAACAAAACTCAAA
Protein sequenceShow/hide protein sequence
IQEYLKSSKFLPKLNNERQDEKNVVYKERFSSLNKLVLLMNEDDSFLIPRETAWFGYYEDGSTDRKVVPATETNLYKEDWIGLKSLNESGKVITLKVPGDHANLTDESMS
KFVVPYLVDDAADLALTSAITTKLK