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MS012303 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012303
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold317:47522..47846
RNA-Seq ExpressionMS012303
SyntenyMS012303
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010495244.1 PREDICTED: uncharacterized protein LOC104772312 [Camelina sativa]4.0e-2144.23Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLSENMCRL--RSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAGT
        Y M+CFKIPK  C ++ R +  +WW T ++   +HW++ +  +   + GGL FRD+E FN+ LLAKQ WR +QHPN L+SR++KG +  +S++ +A  GT
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLSENMCRL--RSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAGT

Query:  QSSY
        Q S+
Subjt:  QSSY
XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]1.8e-2147.66Show/hide
Query:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLRS-GGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD
        +  Y MS F++PK FC ++S+   RFWWG++   K++HW+S E MC  +  GGLNFRDLE FN+ L+AKQ+WR +Q+PN+LVSRV+K  +  +S + +A 
Subjt:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLRS-GGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD

Query:  AGTQSSY
             SY
Subjt:  AGTQSSY
XP_027095012.1 uncharacterized protein LOC113715059 [Coffea arabica]6.1e-2249.53Show/hide
Query:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD
        V  Y MSCFK+P+  C DLS  M  +WWG    K ++HW+S + M + R  GGLNF+DLE FNK LL KQ+WRFI  PNLLVSRV+K  +  + S+F   
Subjt:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD

Query:  AGTQSSY
          + +S+
Subjt:  AGTQSSY
XP_027103025.1 uncharacterized protein LOC113724316 [Coffea arabica]1.5e-2047.66Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHW-----LSENMCRLRSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD
        Y M+C K+PK  CVD+ +EM +FWWG  +  ++IHW     LSE   R   GGL FRDL+ FN  +LAKQLWR +  PNLLVSR+++G + R SS +E +
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHW-----LSENMCRLRSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD

Query:  AGTQSSY
             S+
Subjt:  AGTQSSY
XP_027103277.1 uncharacterized protein LOC113724589 [Coffea arabica]6.8e-2151.06Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLF
        Y MSC K+PK  C D+ +EM +FWWG  E  ++IHW+    +  L+  GGL FRDL+ FN  +LAKQLWRF+  PNLLVS++I+G + R SS++
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLF
TrEMBL top hitse value%identityAlignment
A0A1J3DQV4 Putative mitochondrial protein1.9e-2148.08Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLRS-GGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAGT
        Y MSCF++PK  C  L R M  FWW + E+KK+IHW+S E MC  ++ GG+ FRD+E FN+ LLAKQ WR +Q P  LV+RV+K ++  ++   EA  G 
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLRS-GGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAGT

Query:  QSSY
        + S+
Subjt:  QSSY
A0A6J1BRN0 uncharacterized protein LOC1110047878.6e-2247.66Show/hide
Query:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLRS-GGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD
        +  Y MS F++PK FC ++S+   RFWWG++   K++HW+S E MC  +  GGLNFRDLE FN+ L+AKQ+WR +Q+PN+LVSRV+K  +  +S + +A 
Subjt:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLRS-GGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD

Query:  AGTQSSY
             SY
Subjt:  AGTQSSY
A0A6P6UZJ1 uncharacterized protein LOC1137150593.0e-2249.53Show/hide
Query:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD
        V  Y MSCFK+P+  C DLS  M  +WWG    K ++HW+S + M + R  GGLNF+DLE FNK LL KQ+WRFI  PNLLVSRV+K  +  + S+F   
Subjt:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD

Query:  AGTQSSY
          + +S+
Subjt:  AGTQSSY
A0A6P6VMX3 uncharacterized protein LOC1137245893.3e-2151.06Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLF
        Y MSC K+PK  C D+ +EM +FWWG  E  ++IHW+    +  L+  GGL FRDL+ FN  +LAKQLWRF+  PNLLVS++I+G + R SS++
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLF
A0A803Q1K6 Uncharacterized protein3.3e-2147.66Show/hide
Query:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD
        + TY MSCFK+PK     L R  +RFWWG+++ +K+IHW     +CR +  GGL FRDL MFN+ LLAKQ+WR ++HP LL SRV+K  +     + EA 
Subjt:  VSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR-SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEAD

Query:  AGTQSSY
         G  +S+
Subjt:  AGTQSSY
SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003107.8e-2042.86Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR--SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAG
        Y MSCF++ K  C  L+  MT FWW + E+K++I W++ + +C+ +   GGL FRDL  FN+ LLAKQ +R I  P+ L+SR+++  +   SS+ E   G
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR--SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAG

Query:  TQSSY
        T+ SY
Subjt:  TQSSY
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.2e-1734.29Show/hide
Query:  TYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLSEN--MCRLRSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAG
        TY M+CF +PK+ C  +   +  FWW   +  K +HW + +   C    GG+ F+D+E FN  LL KQ+WR +  P  L+++V K  +  +S    A  G
Subjt:  TYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLSEN--MCRLRSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAG

Query:  TQSSY
        ++ S+
Subjt:  TQSSY
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.5e-2142.86Show/hide
Query:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR--SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAG
        Y MSCF++ K  C  L+  MT FWW + E+K++I W++ + +C+ +   GGL FRDL  FN+ LLAKQ +R I  P+ L+SR+++  +   SS+ E   G
Subjt:  YVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLS-ENMCRLR--SGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAG

Query:  TQSSY
        T+ SY
Subjt:  TQSSY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATACGGTGTCTACATACGTGATGAGCTGCTTCAAGATCCCGAAGTCTTTTTGTGTAGATTTATCGAGGGAAATGACTAGATTCTGGTGGGGTACGACAGAATCAAAGAA
AAGAATCCATTGGCTGAGTGAGAATATGTGTCGCCTTAGGAGTGGAGGGCTAAATTTTCGTGATTTGGAGATGTTTAATAAAGATTTATTGGCTAAGCAATTATGGCGGT
TCATCCAACATCCAAATTTGTTGGTTTCGAGGGTTATTAAAGGTCTCCATGCACGGGAGAGCTCTCTTTTTGAAGCGGATGCTGGAACTCAATCCTCGTAT
mRNA sequenceShow/hide mRNA sequence
AATACGGTGTCTACATACGTGATGAGCTGCTTCAAGATCCCGAAGTCTTTTTGTGTAGATTTATCGAGGGAAATGACTAGATTCTGGTGGGGTACGACAGAATCAAAGAA
AAGAATCCATTGGCTGAGTGAGAATATGTGTCGCCTTAGGAGTGGAGGGCTAAATTTTCGTGATTTGGAGATGTTTAATAAAGATTTATTGGCTAAGCAATTATGGCGGT
TCATCCAACATCCAAATTTGTTGGTTTCGAGGGTTATTAAAGGTCTCCATGCACGGGAGAGCTCTCTTTTTGAAGCGGATGCTGGAACTCAATCCTCGTAT
Protein sequenceShow/hide protein sequence
NTVSTYVMSCFKIPKSFCVDLSREMTRFWWGTTESKKRIHWLSENMCRLRSGGLNFRDLEMFNKDLLAKQLWRFIQHPNLLVSRVIKGLHARESSLFEADAGTQSSY