CuGenDBv2

Gene ID	MS012305
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA helicase
Genome location	scaffold317:59786..60355
RNA-Seq Expression	MS012305
Synteny	MS012305
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003678 - DNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022150020.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Momordica charantia]

1.5e-95

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

XP_022150022.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Momordica charantia]

1.5e-95

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

XP_022150023.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X3 [Momordica charantia]

1.5e-95

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

XP_022150024.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X4 [Momordica charantia]

1.5e-95

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

XP_022974240.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucurbita maxima]

2.2e-78

83.33

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDD+IENGQYNNQS+SI SD++DD NVSVACKKFPSIILGSSP VELFD SACYSDI SFL+AK GENFLL STCEEWVQD LDGTLSSLY V+P VG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEY+Y+AG SLLP NIETG ISSNPA++ DSS K LKSQ+NAVSGRSFLDQSVGCIPGLSKRHQR LD SGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D7B7 DNA helicase

7.2e-96

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

A0A6J1D8C5 DNA helicase

7.2e-96

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

A0A6J1D8T6 DNA helicase

7.2e-96

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

A0A6J1D9K8 DNA helicase

7.2e-96

99.44

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

A0A6J1IFJ2 DNA helicase

1.0e-78

83.33

Show/hide

Query:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG
        MAHDD+IENGQYNNQS+SI SD++DD NVSVACKKFPSIILGSSP VELFD SACYSDI SFL+AK GENFLL STCEEWVQD LDGTLSSLY V+P VG
Subjt:  MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVG

Query:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        NSSVSEEY+Y+AG SLLP NIETG ISSNPA++ DSS K LKSQ+NAVSGRSFLDQSVGCIPGLSKRHQR LD SGFHT+
Subjt:  NSSVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

SwissProt top hits

e value

%identity

Alignment

F4INA9 ATP-dependent DNA helicase homolog RECG, chloroplastic

1.5e-13

34.83

Show/hide

Query:  DDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQ-DGLDGTLSSLYPVVPSVGNS
        DDFI+           +SD +   ++ +ACK+FPSIILG S  VEL+  S  Y + +S L      +FL T     W   D L  TLSS  P +    +S
Subjt:  DDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQ-DGLDGTLSSLYPVVPSVGNS

Query:  SVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        S   E   + G S           +S  A    +SE E  S  +  + + FL  S+  +PGLSKRH   LD+ GFHT+
Subjt:  SVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

Arabidopsis top hits

e value

%identity

Alignment

AT2G01440.1 DEAD/DEAH box RNA helicase family protein

1.0e-14

34.83

Show/hide

Query:  DDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQ-DGLDGTLSSLYPVVPSVGNS
        DDFI+           +SD +   ++ +ACK+FPSIILG S  VEL+  S  Y + +S L      +FL T     W   D L  TLSS  P +    +S
Subjt:  DDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQ-DGLDGTLSSLYPVVPSVGNS

Query:  SVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV
        S   E   + G S           +S  A    +SE E  S  +  + + FL  S+  +PGLSKRH   LD+ GFHT+
Subjt:  SVSEEYSYNAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTV

Sequences

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CDS sequence

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ATGGCTCATGATGATTTTATTGAGAATGGACAATACAACAATCAATCCAGTTCAATTCAATCAGATTCAGAGGATGATTATAATGTTTCCGTAGCATGTAAAAAATTTCC
ATCCATCATATTGGGAAGTTCTCCTCGAGTTGAATTATTTGATGCCTCTGCATGTTATTCAGATATTACGAGCTTTTTAGCAGCTAAAAATGGTGAGAACTTCCTTCTGA
CTTCAACTTGTGAAGAGTGGGTACAAGATGGTCTGGATGGAACTCTGTCTTCGCTGTACCCTGTCGTTCCAAGTGTAGGAAATTCTTCAGTAAGTGAAGAATATTCTTAT
AATGCTGGTCCATCTCTTCTGCCTACGAATATTGAGACTGGAATAATATCTAGTAATCCAGCTATCGATGGAGACTCTTCAGAAAAGGAGTTAAAATCACAACATAATGC
AGTATCTGGCAGGTCATTTCTTGACCAGTCCGTTGGTTGCATACCTGGATTAAGTAAGAGGCACCAGCGCCTGCTTGACAATAGCGGCTTCCACACAGTGAGTTTTTGTT
TTTACTATGTTTTTATTCTT

mRNA sequence

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Protein sequence

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MAHDDFIENGQYNNQSSSIQSDSEDDYNVSVACKKFPSIILGSSPRVELFDASACYSDITSFLAAKNGENFLLTSTCEEWVQDGLDGTLSSLYPVVPSVGNSSVSEEYSY
NAGPSLLPTNIETGIISSNPAIDGDSSEKELKSQHNAVSGRSFLDQSVGCIPGLSKRHQRLLDNSGFHTVSFCFYYVFIL

MS012305 (gene) of Bitter gourd (TR) v1 genome