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MS012311 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012311
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold317:177015..177206
RNA-Seq ExpressionMS012311
SyntenyMS012311
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RHN38980.1 putative transcription factor interactor and regulator CCHC(Zn) family [Medicago truncatula]7.2e-1049.21Show/hide
Query:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        V+L  +TC C +W+L GIPCPH+I CIW+ +K+P+DYV  ++ K TF  TY + I   NG  L
Subjt:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

XP_011459381.1 PREDICTED: uncharacterized protein LOC105349948 [Fragaria vesca subsp. vesca]1.3e-1153.12Show/hide
Query:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        +VDL M TC C RWNL GIPC H++  I F R+ PEDY+   + K+T+  TY H IQ +NG+DL
Subjt:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

XP_023920212.1 uncharacterized protein LOC112031734 [Quercus suber]1.4e-1047.62Show/hide
Query:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVD
        +VDL  HTC CYRW++ GIPC H++  I + ++  E YVH Y+  +T+  TY H+IQ  NG D
Subjt:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVD

XP_024628168.1 uncharacterized protein LOC112417192 [Medicago truncatula]7.2e-1049.21Show/hide
Query:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        V+L  +TC C +W+L GIPCPH+I CIW+ +K+P+DYV  ++ K TF  TY + I   NG  L
Subjt:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

XP_039683764.1 uncharacterized protein LOC120576957 [Medicago truncatula]7.2e-1049.21Show/hide
Query:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        V+L  +TC C +W+L GIPCPH+I CIW+ +K+P+DYV  ++ K TF  TY + I   NG  L
Subjt:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

TrEMBL top hitse value%identityAlignment
A0A0L9U3T6 SWIM-type domain-containing protein4.5e-1046.88Show/hide
Query:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        +VDL  H+C CY W+L+GIPC H++  I + +++PEDYVH Y+ K+ +D  Y   I  ING  L
Subjt:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

A0A1S3U0L8 uncharacterized protein LOC1067606571.7e-0946.88Show/hide
Query:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        +VD+  H+C CY WNL+GIPC H++  I +  ++PEDYVH Y+ KQ +   Y   I  ING  L
Subjt:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

A0A2P6QMI2 Putative transcription factor interactor and regulator CCHC(Zn) family5.9e-1048.44Show/hide
Query:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        IVD+   +C C RW+L GIPC H++  I FMR+ PEDYVH  +  +T+  TY + I  +NG+DL
Subjt:  IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

A0A2Z6N1A6 SWIM-type domain-containing protein1.3e-0951.67Show/hide
Query:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQING
        V++   TC C +W+L GIPCPHSI CIW   + PEDYV   + K TF  TY H I   NG
Subjt:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQING

A0A396GCJ3 Putative transcription factor interactor and regulator CCHC(Zn) family3.5e-1049.21Show/hide
Query:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL
        V+L  +TC C +W+L GIPCPH+I CIW+ +K+P+DYV  ++ K TF  TY + I   NG  L
Subjt:  VDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGTAGACCTCTTTATGCACACCTGTATTTGCTATAGATGGAATTTGATAGGAATACCGTGCCCTCACTCCATTCAATGTATTTGGTTCATGAGAAAAGACCCCGAAGA
TTATGTGCATAGGTATTTTCATAAACAAACTTTTGATATTACCTACCCTCACTATATTCAACAAATTAATGGAGTAGATCTT
mRNA sequenceShow/hide mRNA sequence
ATAGTAGACCTCTTTATGCACACCTGTATTTGCTATAGATGGAATTTGATAGGAATACCGTGCCCTCACTCCATTCAATGTATTTGGTTCATGAGAAAAGACCCCGAAGA
TTATGTGCATAGGTATTTTCATAAACAAACTTTTGATATTACCTACCCTCACTATATTCAACAAATTAATGGAGTAGATCTT
Protein sequenceShow/hide protein sequence
IVDLFMHTCICYRWNLIGIPCPHSIQCIWFMRKDPEDYVHRYFHKQTFDITYPHYIQQINGVDL