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MS012312 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012312
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold317:177285..177524
RNA-Seq ExpressionMS012312
SyntenyMS012312
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5581857.1 hypothetical protein H5410_052484, partial [Solanum commersonii]1.1e-1556.41Show/hide
Query:  PTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER
        P Q WTR  FK++ +CDMLLNN+ ESFN YIL+AR+KPI+TM E+I+  LM R+H KR  I K++ KI PKI  +L +
Subjt:  PTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER

XP_006357385.1 PREDICTED: uncharacterized protein LOC102588609 [Solanum tuberosum]1.1e-1556.41Show/hide
Query:  PTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER
        P Q WTR  FK++ +CDMLLNN+ ESFN YIL+AR+KPI+TM E+I+  LM R+H KR  I K++ KI PKI  +L +
Subjt:  PTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER

XP_020418449.1 uncharacterized protein LOC109948935 isoform X2 [Prunus persica]1.9e-1559.46Show/hide
Query:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER
        W RH F   +KCDMLLNN+ E FNS+IL AR+KPILTM E+IR  +M R+  KR++I+K EG I PKIQ +LE+
Subjt:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER

XP_027082700.1 uncharacterized protein LOC113705034 [Coffea arabica]1.4e-1556.41Show/hide
Query:  IPTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELE
        IP   W+R  F   SKCD+L NN+SESFN YI EAR +PIL+MFE IR+ +M R  KKRE I+K +GKI P+I  ++E
Subjt:  IPTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELE

XP_034693874.1 uncharacterized protein LOC117920444 [Vitis riparia]1.4e-1556.76Show/hide
Query:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER
        W+RHAF   SK D L+NNI+ESFN++ILEAR+KP+LTM E+IR TLM R+  KR+ + ++EG++ P+I  +LER
Subjt:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELER

TrEMBL top hitse value%identityAlignment
A0A2N9FDQ0 SWIM-type domain-containing protein1.1e-1656Show/hide
Query:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA
        W++HA     KCDMLLNN++E+FNSYILEAR+KPI+TM E+IR+ LM R H KR+ + ++E  I P+I+A+LE++
Subjt:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA

A0A2N9FV19 SWIM-type domain-containing protein1.4e-1656Show/hide
Query:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA
        W++HA     KCDMLLNN++E+FNSYILEAR+KPI+TM E+IR+ LM R H KR+ + ++E  I P+I+A+LE++
Subjt:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA

A0A2N9GX21 SWIM-type domain-containing protein1.1e-1656Show/hide
Query:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA
        W++HA     KCDMLLNN++E+FNSYILEAR+KPI+TM E+IR+ LM R H KR+ + ++E  I P+I+A+LE++
Subjt:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA

A0A2N9H391 SWIM-type domain-containing protein1.1e-1656Show/hide
Query:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA
        W++HA     KCDMLLNN++E+FNSYILEAR+KPI+TM E+IR+ LM R H KR+ + ++E  I P+I+A+LE++
Subjt:  WTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA

A0A6P6TWH3 uncharacterized protein LOC1137050346.9e-1656.41Show/hide
Query:  IPTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELE
        IP   W+R  F   SKCD+L NN+SESFN YI EAR +PIL+MFE IR+ +M R  KKRE I+K +GKI P+I  ++E
Subjt:  IPTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCCTACCCAATTTTGGACCAGACATGCATTTAAATCACACTCAAAGTGTGATATGCTACTTAACAACATAAGCGAGTCCTTTAATTCCTACATATTAGAGGCTAGGAA
CAAGCCAATTCTTACTATGTTCGAAGTGATTAGGAAAACCCTTATGTCTCGGATTCATAAAAAGCGAGAGGTTATAGCAAAATGGGAGGGAAAAATTACACCAAAAATTC
AAGCTGAGTTAGAAAGAGCA
mRNA sequenceShow/hide mRNA sequence
ATTCCTACCCAATTTTGGACCAGACATGCATTTAAATCACACTCAAAGTGTGATATGCTACTTAACAACATAAGCGAGTCCTTTAATTCCTACATATTAGAGGCTAGGAA
CAAGCCAATTCTTACTATGTTCGAAGTGATTAGGAAAACCCTTATGTCTCGGATTCATAAAAAGCGAGAGGTTATAGCAAAATGGGAGGGAAAAATTACACCAAAAATTC
AAGCTGAGTTAGAAAGAGCA
Protein sequenceShow/hide protein sequence
IPTQFWTRHAFKSHSKCDMLLNNISESFNSYILEARNKPILTMFEVIRKTLMSRIHKKREVIAKWEGKITPKIQAELERA