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MS012319 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012319
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2-like
Genome locationscaffold317:282648..283038
RNA-Seq ExpressionMS012319
SyntenyMS012319
Gene Ontology termsNA
InterPro domainsIPR015410 - Domain of unknown function DUF1985


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040869.1 protein Ycf2-like [Cucumis melo var. makuwa]1.4e-2037.23Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  ++ ++ + +KG G +  +YF+  + VTR+Y+++ F +S   T+DD +K+A LY LESF++P Q+ ++V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL
        YPW R AF+LL++ M + + S+G+ GI +G FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL

KAA0047596.1 protein Ycf2-like [Cucumis melo var. makuwa]3.1e-2037.23Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  +  ++ + + G G +  +YF+  + VTR+Y+++ F +S  GT+DD +K+A LY LESF++P Q+   V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL
        YPW R AF+LL++ M + + S+G+ GI +G FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL

KAA0048427.1 hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa]1.8e-2037.04Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSY
        FG+++F+++  L C  ++ +  +  KG G + +YF+  + VTR+Y+++ F +S  GT+DD +K+  LY LESF++P Q+SV ++ D I       LF+ Y
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSY

Query:  PW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHAL
        PW R AF+LL+  M + + S+G+ GI +  FI ++
Subjt:  PW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHAL

TYK09852.1 protein Ycf2-like [Cucumis melo var. makuwa]2.0e-1937.68Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  +  ++ + +KG G +  +YF+  + VTR+Y+++ F +S  GT+DD +K+A LY LESF++P Q+ + V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGI-GNFIHALL
        YPW R AF+LL++ M + + S+G+ GI + G FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGI-GNFIHALL

TYK23840.1 protein Ycf2-like [Cucumis melo var. makuwa]4.5e-1937.23Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  +  ++ D +KG G +  +YF+  + V R+Y+++ F +S   T+DD +K+A LY LESF++P Q+ + V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL
        YPW R AF+LL++ M + + S+G+ GI I  FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL

TrEMBL top hitse value%identityAlignment
A0A5A7THT9 Protein Ycf2-like6.7e-2137.23Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  ++ ++ + +KG G +  +YF+  + VTR+Y+++ F +S   T+DD +K+A LY LESF++P Q+ ++V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL
        YPW R AF+LL++ M + + S+G+ GI +G FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL

A0A5A7U047 Protein Ycf2-like1.5e-2037.23Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  +  ++ + + G G +  +YF+  + VTR+Y+++ F +S  GT+DD +K+A LY LESF++P Q+   V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL
        YPW R AF+LL++ M + + S+G+ GI +G FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL

A0A5A7U6E1 Protein Ycf2-like2.2e-1937.23Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  +  ++ D +KG G +  +YF+  + V R+Y+++ F +S   T+DD +K+A LY LESF++P Q+ + V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL
        YPW R AF+LL++ M + + S+G+ GI I  FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHALL

A0A5D3CEX9 Protein Ycf2-like9.7e-2037.68Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS
        FG+++FA++  L C  +  ++ + +KG G +  +YF+  + VTR+Y+++ F +S  GT+DD +K+A LY LESF++P Q+ + V  D I+       F+ 
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNS

Query:  YPW-RAAFDLLINSMKKEIGSRGKKGIGI-GNFIHALL
        YPW R AF+LL++ M + + S+G+ GI + G FI  +L
Subjt:  YPW-RAAFDLLINSMKKEIGSRGKKGIGI-GNFIHALL

A0A5D3DX05 DUF1985 domain-containing protein8.8e-2137.04Show/hide
Query:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSY
        FG+++F+++  L C  ++ +  +  KG G + +YF+  + VTR+Y+++ F +S  GT+DD +K+  LY LESF++P Q+SV ++ D I       LF+ Y
Subjt:  FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSY

Query:  PW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHAL
        PW R AF+LL+  M + + S+G+ GI +  FI ++
Subjt:  PW-RAAFDLLINSMKKEIGSRGKKGIGIGNFIHAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATAATGAATATGTATTTTGATGG
TGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTA
TTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATT
GGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT
mRNA sequenceShow/hide mRNA sequence
TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATAATGAATATGTATTTTGATGG
TGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTA
TTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATT
GGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT
Protein sequenceShow/hide protein sequence
FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRILFNSYPWRAAFDLLINSMKKEI
GSRGKKGIGIGNFIHALLI