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MS012320 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012320
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiont-SNARE coiled-coil homology domain-containing protein
Genome locationscaffold317:299724..300840
RNA-Seq ExpressionMS012320
SyntenyMS012320
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006906 - vesicle fusion (biological process)
GO:0048278 - vesicle docking (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031201 - SNARE complex (cellular component)
GO:0000149 - SNARE binding (molecular function)
GO:0005484 - SNAP receptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599198.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia]8.5e-4688.7Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTL+FRKYRDALRSVR PT SSP SASP TSSG GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

KAG7030133.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-4688.7Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTL+FRKYRDALRSVR PT SSP SASP TSSG GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

XP_022156434.1 syntaxin-41-like [Momordica charantia]3.7e-4993.04Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTLLFRKYRDALRSVRAPTSSSP+SASP TSSG GGPVIELVSS LL+PNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANV RARAKM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

XP_022999413.1 syntaxin-43-like [Cucurbita maxima]8.5e-4688.7Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTL+FRKYRDALRSVR PT SSP SASP TSSG GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

XP_023522691.1 syntaxin-41-like, partial [Cucurbita pepo subsp. pepo]8.5e-4688.7Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTL+FRKYRDALRSVR PT SSP SASP TSSG GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

TrEMBL top hitse value%identityAlignment
A0A0A0LLY7 t-SNARE coiled-coil homology domain-containing protein4.6e-4587.83Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTLLF+KYRDALRSVR PTSSSP  ASP TSS GGGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV  AR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

A0A5A7U3M4 Syntaxin-436.0e-4587.83Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTLLF+KYRDALRSVR PTSSS  SASP TSS  GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

A0A6J1DTG3 syntaxin-41-like1.8e-4993.04Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTLLFRKYRDALRSVRAPTSSSP+SASP TSSG GGPVIELVSS LL+PNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANV RARAKM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

A0A6J1G576 syntaxin-43-like4.1e-4688.7Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTL+FRKYRDALRSVR PT SSP SASP TSSG GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

A0A6J1KJM9 syntaxin-43-like4.1e-4688.7Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MASRNRTL+FRKYRDALRSVR PT SSP SASP TSSG GGPVIELVSS LL+PNR+YAPLSTEDPGNSSKGA TVGLPPAWVDVSEEIAANV RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
        MEL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

SwissProt top hitse value%identityAlignment
O65359 Syntaxin-414.3e-4075.65Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MA+RNRTLLFRKYR++LRSVRAP SSS ++    T SGG GPVIE+ S+ LLNPNR+YAP+STEDPG SSKGA TVGLPPAWVDVSEEI+ N+ RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

Q9SUJ1 Syntaxin-438.3e-3668.33Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSS-----GGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLR
        MA+RNRTLLFRKYR++LRSVRAP  SS  S   + +S      G GPVIE+ S+ LLNPNR+YAP+STEDPGNSS+G  TVGLPP WVDVSEEI+  + R
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSS-----GGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLR

Query:  ARAKMMELDKAHAKALMPSF
        AR KM EL KAHAKALMPSF
Subjt:  ARAKMMELDKAHAKALMPSF

Q9SWH4 Syntaxin-421.1e-2455.17Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNR-TYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAK
        MA+RNRT ++RK+RDA +S RAP S S        S   GGPVIE+VS      N  +YAPL++ DPG SS  A T+G+PPAWVD SEEI  N+ + R K
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNR-TYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAK

Query:  MMELDKAHAKALMPSF
        M EL KAH+KALMP+F
Subjt:  MMELDKAHAKALMPSF

Arabidopsis top hitse value%identityAlignment
AT3G05710.1 syntaxin of plants 434.2e-3567.5Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSS-----GGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLR
        MA+RNRTLLFRKYR++LRSVRAP  SS  S   + +S      G GPVIE+ S+ LLNPNR+YAP+STEDPGN S+G  TVGLPP WVDVSEEI+  + R
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSS-----GGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLR

Query:  ARAKMMELDKAHAKALMPSF
        AR KM EL KAHAKALMPSF
Subjt:  ARAKMMELDKAHAKALMPSF

AT3G05710.2 syntaxin of plants 435.9e-3768.33Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSS-----GGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLR
        MA+RNRTLLFRKYR++LRSVRAP  SS  S   + +S      G GPVIE+ S+ LLNPNR+YAP+STEDPGNSS+G  TVGLPP WVDVSEEI+  + R
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSS-----GGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLR

Query:  ARAKMMELDKAHAKALMPSF
        AR KM EL KAHAKALMPSF
Subjt:  ARAKMMELDKAHAKALMPSF

AT4G02195.1 syntaxin of plants 428.0e-2655.17Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNR-TYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAK
        MA+RNRT ++RK+RDA +S RAP S S        S   GGPVIE+VS      N  +YAPL++ DPG SS  A T+G+PPAWVD SEEI  N+ + R K
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNR-TYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAK

Query:  MMELDKAHAKALMPSF
        M EL KAH+KALMP+F
Subjt:  MMELDKAHAKALMPSF

AT5G26980.1 syntaxin of plants 413.0e-4175.65Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MA+RNRTLLFRKYR++LRSVRAP SSS ++    T SGG GPVIE+ S+ LLNPNR+YAP+STEDPG SSKGA TVGLPPAWVDVSEEI+ N+ RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF

AT5G26980.2 syntaxin of plants 413.0e-4175.65Show/hide
Query:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM
        MA+RNRTLLFRKYR++LRSVRAP SSS ++    T SGG GPVIE+ S+ LLNPNR+YAP+STEDPG SSKGA TVGLPPAWVDVSEEI+ N+ RAR KM
Subjt:  MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKM

Query:  MELDKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELDKAHAKALMPSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAGGAATCGGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCGCCAATTTCGGCATCGCCACAGACTAGTTC
TGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCGGACTTATGCTCCCTTGAGCACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTC
ATACCGTGGGTCTGCCTCCTGCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCTACGTGCACGAGCAAAGATGATGGAGTTAGATAAAGCTCATGCGAAGGCT
TTAATGCCTTCATTT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAGGAATCGGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCGCCAATTTCGGCATCGCCACAGACTAGTTC
TGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCGGACTTATGCTCCCTTGAGCACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTC
ATACCGTGGGTCTGCCTCCTGCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCTACGTGCACGAGCAAAGATGATGGAGTTAGATAAAGCTCATGCGAAGGCT
TTAATGCCTTCATTT
Protein sequenceShow/hide protein sequence
MASRNRTLLFRKYRDALRSVRAPTSSSPISASPQTSSGGGGPVIELVSSLLLNPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVLRARAKMMELDKAHAKA
LMPSF