; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012340 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012340
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell;
Genome locationscaffold63:61742..64585
RNA-Seq ExpressionMS012340
SyntenyMS012340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149233.1 uncharacterized protein LOC111017704 [Momordica charantia]2.2e-9198.39Show/hide
Query:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
        MP DGE EVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
Subjt:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI

Query:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        IKFWK VLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
Subjt:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

XP_022922529.1 uncharacterized protein LOC111430498 [Cucurbita moschata]6.1e-7079.12Show/hide
Query:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW
        GEG  AG T    A+++++SSS T+R GRRVDPLLVTCRFFSV+TALTAILCIV NVI+A+RSFK+K+DIFDGIFRCYAV+IA FVVLAETEWEFI+K W
Subjt:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW

Query:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        K VLEYWAGRGMLQIFVAVMTRAFPAYS +QRE I+LQ+ ASYLLL CGAVYV SGILC+GFLKRAREEKET+K+R VKDLQ
Subjt:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

XP_022984240.1 uncharacterized protein LOC111482612 [Cucurbita maxima]1.0e-6979.12Show/hide
Query:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW
        GEG  AG T    A+++++SSS T R GRRVDPLLVTCRFFSV+TALTAILCIV NVI+A+RSFK+K+DIFDGIFRCYAV+IA FVVLAETEWEFI+K W
Subjt:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW

Query:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        K VLEYWAGRGMLQIFVAVMTRAFPAYS +QRE I+LQ+ ASYLLL CGAVYV SGILC+GFLKRAREEKET+K+R VKDLQ
Subjt:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

XP_023552582.1 uncharacterized protein LOC111810200 isoform X2 [Cucurbita pepo subsp. pepo]2.3e-6978.02Show/hide
Query:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW
        GEG   G T    A+++++SSS T+R GRRVDPLLVTCRFFSV+TALTAILCIV NV++A+RSFK+K+DIFDGIFRCYAV+IA FVVLAETEWEFI+K W
Subjt:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW

Query:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        K VLEYWAGRGMLQIFVAVMTRAFPAYS +QRE I+LQ+ ASYLLL CGAVYV SGILC+GFLKRAREEKET+K+R VKDLQ
Subjt:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

XP_038905258.1 uncharacterized protein LOC120091338 isoform X1 [Benincasa hispida]3.0e-6978.49Show/hide
Query:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
        M  DGEG         A ++++SSSS T R  RRVDPLLVTCRFFSVLTALTAILCIV NVISA+RSFK+K+D+FDGIFRCYAV+IA FVVLAETEWEFI
Subjt:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI

Query:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        +K WK VLEYWAGRGMLQIFVAVMTRAFP YS +QRELI+LQD ASYLLL CGAVYV SGILC+GFLKRAREEKETAK+R VKDLQ
Subjt:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KYH6 Uncharacterized protein2.5e-6979.03Show/hide
Query:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
        M  +GEG  A     PAASSSSSSSS  TR  R VDPLLVTCRFFSV+TALTAILCIV NVISA+RSFK+++DIFDGIFRCYAV+IA F VLAETEWEFI
Subjt:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI

Query:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
         K WK VLEYWAGRGMLQIFVAVMTRAFP YS +QRELI+LQD ASYLLL CGAVYV SGILC+GFLKRARE+KETAK++ VKDLQ
Subjt:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

A0A1S3BY74 uncharacterized protein LOC1034948611.6e-6877.42Show/hide
Query:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
        M  +GEG      P  ++SSSSSSSS  TR  R VDPLLVTCRFFSV+TALTAILCIV NVISA+RSFK+++DIFDGIFRCYAV+I  FVVLAETEWEFI
Subjt:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI

Query:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
         K WK VLEYWAGRGMLQIFVAVMTRAFP YS +QRELI+LQD ASYLLL CGAVYV SGILC+GFLKRARE+KETAK++ VKDLQ
Subjt:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

A0A6J1D697 uncharacterized protein LOC1110177041.1e-9198.39Show/hide
Query:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
        MP DGE EVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI
Subjt:  MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFI

Query:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        IKFWK VLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
Subjt:  IKFWKVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

A0A6J1E3M8 uncharacterized protein LOC1114304983.0e-7079.12Show/hide
Query:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW
        GEG  AG T    A+++++SSS T+R GRRVDPLLVTCRFFSV+TALTAILCIV NVI+A+RSFK+K+DIFDGIFRCYAV+IA FVVLAETEWEFI+K W
Subjt:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW

Query:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        K VLEYWAGRGMLQIFVAVMTRAFPAYS +QRE I+LQ+ ASYLLL CGAVYV SGILC+GFLKRAREEKET+K+R VKDLQ
Subjt:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

A0A6J1J849 uncharacterized protein LOC1114826125.1e-7079.12Show/hide
Query:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW
        GEG  AG T    A+++++SSS T R GRRVDPLLVTCRFFSV+TALTAILCIV NVI+A+RSFK+K+DIFDGIFRCYAV+IA FVVLAETEWEFI+K W
Subjt:  GEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFW

Query:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        K VLEYWAGRGMLQIFVAVMTRAFPAYS +QRE I+LQ+ ASYLLL CGAVYV SGILC+GFLKRAREEKET+K+R VKDLQ
Subjt:  KVVLEYWAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33625.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).2.6e-5863.95Show/hide
Query:  VPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFWKVVLEYWAGR
        +  + +  SS S   + G R DP LV CR FS++T+L AILC+VVNV++AVRSF+D  D+FDGIFRCYAV+IA FVVL ETEW FI+KF K VLEYWAGR
Subjt:  VPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFWKVVLEYWAGR

Query:  GMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        GMLQIFVAVMTRAFP Y   +++L++LQ++ASYLLL CG +YV SG+LC+GFLKRAR++KE ++E+ VKDL+
Subjt:  GMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ

AT4G33625.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2.6e-5863.95Show/hide
Query:  VPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFWKVVLEYWAGR
        +  + +  SS S   + G R DP LV CR FS++T+L AILC+VVNV++AVRSF+D  D+FDGIFRCYAV+IA FVVL ETEW FI+KF K VLEYWAGR
Subjt:  VPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFWKVVLEYWAGR

Query:  GMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ
        GMLQIFVAVMTRAFP Y   +++L++LQ++ASYLLL CG +YV SG+LC+GFLKRAR++KE ++E+ VKDL+
Subjt:  GMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATAGATGGAGAGGGAGAAGTCGCCGGAATAACGCCGGTGCCGGCAGCGTCGTCGTCGTCGTCGTCGTCTTCTCACACCACCCGACATGGAAGGAGGGTTGATCC
TCTGCTGGTTACTTGCAGGTTTTTCAGTGTTTTAACTGCTCTAACTGCCATTCTCTGTATCGTTGTCAATGTTATCTCTGCCGTTCGATCTTTCAAGGACAAAGCCGACA
TTTTCGATGGTATATTTCGGTGTTATGCGGTTTTGATTGCATCCTTCGTGGTTCTTGCTGAGACGGAATGGGAATTTATTATCAAGTTCTGGAAGGTTGTATTGGAATAT
TGGGCTGGCCGGGGCATGTTGCAAATCTTTGTTGCAGTTATGACAAGAGCTTTCCCTGCGTATTCTGAAGACCAAAGGGAGCTTATTATTCTTCAAGACGTTGCAAGTTA
TCTGCTCCTCGGTTGTGGTGCAGTCTATGTTGCATCGGGAATACTATGCCTTGGGTTTCTCAAACGTGCTCGTGAAGAGAAAGAGACTGCAAAGGAGAGGACTGTCAAAG
ATCTTCAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCATAGATGGAGAGGGAGAAGTCGCCGGAATAACGCCGGTGCCGGCAGCGTCGTCGTCGTCGTCGTCGTCTTCTCACACCACCCGACATGGAAGGAGGGTTGATCC
TCTGCTGGTTACTTGCAGGTTTTTCAGTGTTTTAACTGCTCTAACTGCCATTCTCTGTATCGTTGTCAATGTTATCTCTGCCGTTCGATCTTTCAAGGACAAAGCCGACA
TTTTCGATGGTATATTTCGGTGTTATGCGGTTTTGATTGCATCCTTCGTGGTTCTTGCTGAGACGGAATGGGAATTTATTATCAAGTTCTGGAAGGTTGTATTGGAATAT
TGGGCTGGCCGGGGCATGTTGCAAATCTTTGTTGCAGTTATGACAAGAGCTTTCCCTGCGTATTCTGAAGACCAAAGGGAGCTTATTATTCTTCAAGACGTTGCAAGTTA
TCTGCTCCTCGGTTGTGGTGCAGTCTATGTTGCATCGGGAATACTATGCCTTGGGTTTCTCAAACGTGCTCGTGAAGAGAAAGAGACTGCAAAGGAGAGGACTGTCAAAG
ATCTTCAG
Protein sequenceShow/hide protein sequence
MPIDGEGEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFWKVVLEY
WAGRGMLQIFVAVMTRAFPAYSEDQRELIILQDVASYLLLGCGAVYVASGILCLGFLKRAREEKETAKERTVKDLQ