CuGenDBv2

Gene ID	MS012376
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Tubulin alpha chain
Genome location	scaffold63:286429..290698
RNA-Seq Expression	MS012376
Synteny	MS012376
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

4.7e-96

83.12

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MA LQ+LKS VSP SISQP FG +SSRF S+ DSTRRF   HGRRRSLRYGCV RRLSFRCAAQD+DKESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+++ DFGLGGEM GE RDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G +TPISPPPYVDPYALLEDERISQ APRVN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

XP_022149320.1 uncharacterized protein LOC111017763 [Momordica charantia]

3.8e-114

96.09

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESN         GEEPPESLFMKELKKRGLTP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  GETPISPPPYVDPYALLEDERISQTAPRVN
        GETPISPPPYVDPYALLEDERISQTAPRVN
Subjt:  GETPISPPPYVDPYALLEDERISQTAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

1.6e-96

83.55

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MA LQ+LKS VSP SISQP FG +SSRF S+ DSTRRFV  HGRRRSLRYGCV RRLSFRCAAQD+DKESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+++ DFGLGGEM GE RDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G +TPISPPPYVDPYALLEDERISQ APRVN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

8.1e-96

83.12

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MA LQ+LKS VSP SISQP FG +SSRF  + DSTRRFV  HGRRRSLRYGCV RRLSFRCAAQD+DKESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+++ DFGLGGEM GE RDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G +TPISPPPYVDPYALLEDERISQ APRVN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

XP_038905067.1 uncharacterized protein LOC120091218 isoform X1 [Benincasa hispida]

2.5e-97

84.42

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MAALQ+LKS VSP SISQPNFG +SSRF S  DSTRRFV  HGRRRSLRYGCVCRRLSFRCAAQDADK+SN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+N++DFGLGGEMTGE RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFFALYFFFG SFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G  T ISPP YVDPYALLE+ERISQ AP VN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

1.3e-91

79.57

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MA+LQ+LKS +S  SIS PNFG +S+RF S  DS    +  HGRRRSLR  CVCRR SFRCAA+DADKESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+N++DFGLGGEMTGE RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFFFG SF+H+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  GETPISPPPYVDPYALLEDERISQTAPRVN
        G+TPISPPPYVDPYALLEDERISQ AP VN
Subjt:  GETPISPPPYVDPYALLEDERISQTAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

1.9e-114

96.09

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESN         GEEPPESLFMKELKKRGLTP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  GETPISPPPYVDPYALLEDERISQTAPRVN
        GETPISPPPYVDPYALLEDERISQTAPRVN
Subjt:  GETPISPPPYVDPYALLEDERISQTAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

5.1e-96

82.68

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MA LQ+LKS VSP SISQP FG +SSRF S+ DSTRRF   HGRRRSLRYGCV RRLSFRCAAQD+DKESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+++ DFGLGGEM GE RDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G +TPISPPPYVDPYALLEDER+SQ APRVN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

7.9e-97

83.55

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MA LQ+LKS VSP SISQP FG +SSRF S+ DSTRRFV  HGRRRSLRYGCV RRLSFRCAAQD+DKESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+++ DFGLGGEM GE RDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G +TPISPPPYVDPYALLEDERISQ APRVN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

7.1e-90

79.22

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Query:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP
        MAALQ+LKS VS LS SQ +FG +SSRF ++ DS+RR VRFHGRRRSLRYGCVCRRLSFRCAAQD+ KESN         GEEPPESLFMKELKKRG+TP
Subjt:  MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTP

Query:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN
        TSLLED+ S +F LGGE TGE  DFS  SAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITV+FFFA YFFFG SFVH+
Subjt:  TSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN

Query:  G-ETPISPPPYVDPYALLEDERISQTAPRVN
        G +TP SPPPYV PYA LEDERISQ APRVN
Subjt:  G-ETPISPPPYVDPYALLEDERISQTAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

9.6e-47

65.79

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Query:  GEEPPESLFMKELKKRGLTPTSLLEDSN-SNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI
        GEEPPESLFMKELK+RG+TPTSLL+D     D    G+ TG     S  +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLI
Subjt:  GEEPPESLFMKELKKRGLTPTSLLEDSN-SNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI

Query:  VITVSFFFALYFFFGPSFVHNG-ETPISPPPYVDPYALLEDERISQTAPRVN
        V+T+  F ALY +FG  F+H+G  TP+SPPPY+DPYALLEDERIS   PR+N
Subjt:  VITVSFFFALYFFFGPSFVHNG-ETPISPPPYVDPYALLEDERISQTAPRVN

Sequences

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CDS sequence

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ATGGCTGCCTTGCAAGTTCTGAAATCGGCCGTCTCTCCACTTTCGATCTCCCAGCCGAATTTTGGCTGCCGATCAAGCCGCTTTCTCTCTCAGTCGGATTCCACGAGGAG
GTTTGTGCGGTTCCATGGCCGTCGGAGGAGTTTGAGATATGGTTGCGTTTGTAGAAGGTTGAGTTTCCGCTGCGCTGCTCAGGATGCTGATAAGGAAAGCAATGGCAAGT
GCTTTACATTATCTTTTGCAGGAGAAGAACCTCCGGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTTTAACTCCCACCTCCTTGCTTGAGGATAGTAACAGCAAT
GACTTCGGACTTGGTGGTGAGATGACGGGAGAAGGAAGAGATTTCTCCAGTAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCCTGTCCAATCAAAGGGAGCGTTCCAT
GCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCCAAACTTTTGCTAACAATTGGGGGAACATTCTTCTTAGGATTCTGGCCGTTGATCGTCATCACTGTTT
CATTCTTTTTTGCTTTATACTTCTTTTTTGGACCGTCTTTTGTTCATAATGGCGAAACGCCAATATCTCCTCCACCATATGTTGATCCATATGCTCTGTTAGAAGACGAG
AGAATTTCGCAAACAGCTCCTCGTGTAAAT

mRNA sequence

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Protein sequence

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MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDADKESNGKCFTLSFAGEEPPESLFMKELKKRGLTPTSLLEDSNSN
DFGLGGEMTGEGRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHNGETPISPPPYVDPYALLEDE
RISQTAPRVN

MS012376 (gene) of Bitter gourd (TR) v1 genome