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MS012420 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012420
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUBP-type domain-containing protein
Genome locationscaffold63:581705..583134
RNA-Seq ExpressionMS012420
SyntenyMS012420
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044348.1 histone deacetylase 6 [Cucumis melo var. makuwa]1.2e-5983.46Show/hide
Query:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF
        P IIE   E  EE L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCF
Subjt:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF

Query:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        SCDAYLDAQVIQELRPV+EVAYILKFGE PPFR
Subjt:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]4.3e-6286.26Show/hide
Query:  PCIIEEK-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSC
        PC+IEE+ GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC EC+NPKENWLCLCCKN+ CSRFVNKHMLQHYQQS H LALSYSDLSVWCFSC
Subjt:  PCIIEEK-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSC

Query:  DAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        DAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Subjt:  DAYLDAQVIQELRPVYEVAYILKFGEAPPFR

XP_004152271.1 histone deacetylase 6 [Cucumis sativus]2.0e-5984.5Show/hide
Query:  IIEEKGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDA
        IIE++ EE+ L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENW+CLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCFSCDA
Subjt:  IIEEKGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDA

Query:  YLDAQVIQELRPVYEVAYILKFGEAPPFR
        YLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  YLDAQVIQELRPVYEVAYILKFGEAPPFR

XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]4.0e-6084.21Show/hide
Query:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF
        P IIE   E  EE L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCF
Subjt:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF

Query:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        SCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

XP_022149228.1 histone deacetylase 6 [Momordica charantia]2.7e-7299.23Show/hide
Query:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD
        PCIIEE+GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD
Subjt:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD

Query:  AYLDAQVIQELRPVYEVAYILKFGEAPPFR
        AYLDAQVIQELRPVYEVAYILKFGEAPPFR
Subjt:  AYLDAQVIQELRPVYEVAYILKFGEAPPFR

TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein9.7e-6084.5Show/hide
Query:  IIEEKGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDA
        IIE++ EE+ L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENW+CLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCFSCDA
Subjt:  IIEEKGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDA

Query:  YLDAQVIQELRPVYEVAYILKFGEAPPFR
        YLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  YLDAQVIQELRPVYEVAYILKFGEAPPFR

A0A1S3BZ94 histone deacetylase 61.9e-6084.21Show/hide
Query:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF
        P IIE   E  EE L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCF
Subjt:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF

Query:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        SCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

A0A540MHN3 UBP-type domain-containing protein8.2e-5984.8Show/hide
Query:  EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDA
        E  E+  +GAE+GWVEA T CDHLASLSSDLAHIPTPDTAC+ CQ+P ENWLCLCCK+ILCSRFVNKHMLQHYQQS HCLALSYSDLSVWCFSCDAYLDA
Subjt:  EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDA

Query:  QVIQELRPVYEVAYILKFGEAPPFR
        Q+I +LRPVYE AYILKFGEAPPFR
Subjt:  QVIQELRPVYEVAYILKFGEAPPFR

A0A5A7TNA2 Histone deacetylase 65.7e-6083.46Show/hide
Query:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF
        P IIE   E  EE L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCF
Subjt:  PCIIE---EKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF

Query:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        SCDAYLDAQVIQELRPV+EVAYILKFGE PPFR
Subjt:  SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

A0A6J1D695 histone deacetylase 61.3e-7299.23Show/hide
Query:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD
        PCIIEE+GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD
Subjt:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD

Query:  AYLDAQVIQELRPVYEVAYILKFGEAPPFR
        AYLDAQVIQELRPVYEVAYILKFGEAPPFR
Subjt:  AYLDAQVIQELRPVYEVAYILKFGEAPPFR

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 61.4e-1540.37Show/hide
Query:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY
        V  L  C HL  +           TACSECQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+    +   +     A+
Subjt:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY

Query:  ILKFGEAPP
          KFGE  P
Subjt:  ILKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A2.8e-1135.44Show/hide
Query:  TACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILK
        T C  C +  ENW+C+ C  + CSR VN H  +H++ + H ++ S+SD S WC++CD Y+         P++++  IL+
Subjt:  TACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILK

Q9H0E7 Ubiquitin carboxyl-terminal hydrolase 444.0e-1030.95Show/hide
Query:  ALTYCDHLA--SLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL
        A+  C H+    L+ D + +      C +C   +  W CL C ++ C R++ +H L+H+Q+S+H +AL  +++ V+C+ CD Y+
Subjt:  ALTYCDHLA--SLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 62.0e-1739.45Show/hide
Query:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY
        V  L +C HL ++    A        C +C   +ENW+CL C  + C R++N HMLQH+  S H L LSY DLS WC+ C AY+  Q + +++    +A+
Subjt:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY

Query:  ILKFGEAPP
          KFGE  P
Subjt:  ILKFGEAPP

Q9Z2V5 Histone deacetylase 64.8e-1638.53Show/hide
Query:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY
        V  L++C HL ++    A        C  C   +ENW+CL C  + CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+  + +Q+++     A+
Subjt:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY

Query:  ILKFGEAPP
          KFGE  P
Subjt:  ILKFGEAPP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein7.7e-0951.06Show/hide
Query:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACS
        P  + ++ ++ + GA +GWVEA   CDHL +LS DL H+PTPDT CS
Subjt:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACS

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein6.6e-5367.97Show/hide
Query:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD
        P  + ++ ++ + GA +GWVEA   CDHL +LS DL H+PTPDT CS CQNP ENWLCLCCK +LCSRFVN+HML H+QQ+ HCLALSYSDLSVWCF C+
Subjt:  PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCD

Query:  AYLDAQVIQELRPVYEVAYILKFGEAPP
        AYLDAQ+I +LRP+++ AYILKFGEAPP
Subjt:  AYLDAQVIQELRPVYEVAYILKFGEAPP

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein1.0e-0527.87Show/hide
Query:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL
        ++ C  CQ  +  W+C+ C  + C R+   H  +H++++ HC +L      VW ++ D Y+
Subjt:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein1.0e-0527.87Show/hide
Query:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL
        ++ C  CQ  +  W+C+ C  + C R+   H  +H++++ HC +L      VW ++ D Y+
Subjt:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCATGCATAATTGAAGAAAAAGGTGAAGAGCAGTTATTCGGCGCCGAAGCGGGATGGGTAGAAGCCCTGACTTATTGCGATCACCTGGCTTCGCTGTCTTCCGACCTCGC
TCACATTCCGACCCCTGATACTGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGCAAGAATATCCTCTGTAGCCGTTTTGTGAACAAGCACA
TGCTTCAACATTATCAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAAGAA
CTACGACCAGTATATGAAGTTGCCTATATATTGAAATTCGGCGAGGCCCCACCATTTCGT
mRNA sequenceShow/hide mRNA sequence
CCATGCATAATTGAAGAAAAAGGTGAAGAGCAGTTATTCGGCGCCGAAGCGGGATGGGTAGAAGCCCTGACTTATTGCGATCACCTGGCTTCGCTGTCTTCCGACCTCGC
TCACATTCCGACCCCTGATACTGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGCAAGAATATCCTCTGTAGCCGTTTTGTGAACAAGCACA
TGCTTCAACATTATCAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAAGAA
CTACGACCAGTATATGAAGTTGCCTATATATTGAAATTCGGCGAGGCCCCACCATTTCGT
Protein sequenceShow/hide protein sequence
PCIIEEKGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQE
LRPVYEVAYILKFGEAPPFR