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MS012427 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012427
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger SWIM domain-containing protein 7
Genome locationscaffold63:606968..607976
RNA-Seq ExpressionMS012427
SyntenyMS012427
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0097196 - Shu complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600296.1 Zinc finger SWIM domain-containing protein 7, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4791.59Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQ GVKKI G+PSGRSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCCKHQLAARLAASLGA IE KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
KAG7030956.1 Zinc finger SWIM domain-containing protein 7 [Cucurbita argyrosperma subsp. argyrosperma]6.5e-4891.59Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQ GVKKI GEPSGRS+FQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCCKHQLAARLAASLGA IE KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
XP_022149127.1 zinc finger SWIM domain-containing protein 7 [Momordica charantia]8.7e-5399.07Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        ALLLSNL
Subjt:  ALLLSNL
XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]5.0e-4892.52Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQ GVKKI GEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCCKHQLAARLAASLGA IE KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]1.3e-4892.52Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQ GVKKI GEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYD VNRGEQLCCKHQLAARLAASLGA +E KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
TrEMBL top hitse value%identityAlignment
A0A1S3BZP2 zinc finger SWIM domain-containing protein 77.0e-4891.59Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQRGVKKI G PS RSIFQVVGESRRKEEYFCFPENFCACYSFFYD VNRGEQLCCKHQLAARLAAS+GA IE KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
A0A6A1V6L7 Zinc finger SWIM domain-containing protein 73.5e-4787.74Show/hide
Query:  SSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEELA
        SSLHFLFGKNFERAT+IVDQRGVK+I GEPSGRS+FQV+GESRRKEEYFCFPEN+C CYSFFYD VNRGEQLCCKHQLAARLAASLGA IE KVSDE+L 
Subjt:  SSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEELA

Query:  LLLSNL
        +LLSNL
Subjt:  LLLSNL
A0A6J1D5Z4 zinc finger SWIM domain-containing protein 74.2e-5399.07Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        ALLLSNL
Subjt:  ALLLSNL
A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X22.4e-4892.52Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQ GVKKI GEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCCKHQLAARLAASLGA IE KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X26.3e-4992.52Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS LHFLFGKNFERATRIVDQ GVKKI GEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYD VNRGEQLCCKHQLAARLAASLGA +E KVSDEEL
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        A+LLSNL
Subjt:  ALLLSNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33925.1 unknown protein5.3e-4070.09Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL
        LS L  LFGKN E+ATRI+D+RGVKKI G PSGRSIFQVVGES+++EEY CFP ++C CYSFFYD V+RGE  CCKHQLAARLA+SLG + E +VSD+ L
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEEL

Query:  ALLLSNL
        AL+LS +
Subjt:  ALLLSNL
AT4G33925.2 unknown protein1.0e-3572.83Show/hide
Query:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIE
        LS L  LFGKN E+ATRI+D+RGVKKI G PSGRSIFQVVGES+++EEY CFP ++C CYSFFYD V+RGE  CCKHQLAARLA+SLG + E
Subjt:  LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTCCAGCTTGCATTTCTTGTTCGGCAAGAACTTCGAGCGAGCTACTCGAATCGTGGATCAAAGAGGGGTAAAAAAAATTTATGGGGAGCCCAGCGGACGGTCCATCTT
CCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATTTCTGTTTCCCAGAAAATTTTTGTGCCTGTTATTCCTTTTTCTACGACACTGTGAACAGAGGAGAACAACTTT
GCTGCAAGCATCAGTTAGCTGCTAGACTTGCCGCTTCGCTGGGGGCTTTTATTGAAGCTAAAGTATCTGATGAAGAGCTGGCCTTATTATTGTCCAATCTT
mRNA sequenceShow/hide mRNA sequence
TTGTCCAGCTTGCATTTCTTGTTCGGCAAGAACTTCGAGCGAGCTACTCGAATCGTGGATCAAAGAGGGGTAAAAAAAATTTATGGGGAGCCCAGCGGACGGTCCATCTT
CCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATTTCTGTTTCCCAGAAAATTTTTGTGCCTGTTATTCCTTTTTCTACGACACTGTGAACAGAGGAGAACAACTTT
GCTGCAAGCATCAGTTAGCTGCTAGACTTGCCGCTTCGCTGGGGGCTTTTATTGAAGCTAAAGTATCTGATGAAGAGCTGGCCTTATTATTGTCCAATCTT
Protein sequenceShow/hide protein sequence
LSSLHFLFGKNFERATRIVDQRGVKKIYGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDTVNRGEQLCCKHQLAARLAASLGAFIEAKVSDEELALLLSNL