; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012457 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012457
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA repair and recombination protein RAD54-like isoform 1
Genome locationscaffold63:852086..852514
RNA-Seq ExpressionMS012457
SyntenyMS012457
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011651245.1 uncharacterized protein LOC105434859 [Cucumis sativus]3.1e-5375.84Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-----KTTLRDELKVNEDDDNGDGESFPKLTKSSAG-C
        MDPRISFSNDF++T+QPLKLENIYREAPVSSDFEF+VKDR MI ADEIFFQG+LLPLKDS R     KTTLRDEL+VNE++D+    SFPK TK S+G C
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-----KTTLRDELKVNEDDDNGDGESFPKLTKSSAG-C

Query:  WRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        W+E+FGFR+SH   KKQSR+E VLKTV EE++TSVFLHEDLINIARKNG
Subjt:  WRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

XP_022149273.1 uncharacterized protein LOC111017734 [Momordica charantia]1.9e-7499.3Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFG
        MDPRISFSNDFI+TQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFG
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFG

Query:  FRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        FRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
Subjt:  FRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

XP_022942817.1 uncharacterized protein LOC111447733 [Cucurbita moschata]1.2e-5277.03Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGE-SFPKLTKSSAGCW
        MDPRISFSNDF++TQ PLKLENIYREAPVSSDFEF+VKDR MI ADEIF QGRLLPLKDSSR    KTTLRDEL+VNEDDD  + + SFPKLTK+    W
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGE-SFPKLTKSSAGCW

Query:  RERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        +E+FGFRRSH   +KQ R+EGVLKTV EE+K+SVFLHEDLINIARKNG
Subjt:  RERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

XP_022983127.1 uncharacterized protein LOC111481767 [Cucurbita maxima]4.7e-5478.23Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWR
        MDPRISFSNDF++TQ PLKLENIYREAPVSSDFEF+VKDR MI ADEIF QGRLLPLKDSSR    KTTLRDEL+VNEDDD  +  SFPKLTK+    W+
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWR

Query:  ERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        E+FGFRRSH   KKQ R+EGVLKTV EE+K+SVFLHEDLINIARKNG
Subjt:  ERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

XP_038877999.1 uncharacterized protein LOC120070205 [Benincasa hispida]2.1e-5779.33Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR------KTTLRDELKVNEDDDNGDGESFPKLTK-SSAG
        MDPRISFSNDF++T+Q LK+ENIYREAPVSSDFEF+VK+R MI ADEIFFQG+LLPLKDSSR      KTTLRDEL+VNE+DD  D  SFPK TK SSA 
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR------KTTLRDELKVNEDDDNGDGESFPKLTK-SSAG

Query:  CWRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        CW+E+FGFRRSH  PKKQSR+EGVLKTV EEEKTSVFLHEDLINIARKNG
Subjt:  CWRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

TrEMBL top hitse value%identityAlignment
A0A0A0L727 Uncharacterized protein1.5e-5375.84Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-----KTTLRDELKVNEDDDNGDGESFPKLTKSSAG-C
        MDPRISFSNDF++T+QPLKLENIYREAPVSSDFEF+VKDR MI ADEIFFQG+LLPLKDS R     KTTLRDEL+VNE++D+    SFPK TK S+G C
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-----KTTLRDELKVNEDDDNGDGESFPKLTKSSAG-C

Query:  WRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        W+E+FGFR+SH   KKQSR+E VLKTV EE++TSVFLHEDLINIARKNG
Subjt:  WRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

A0A5A7T4Q1 Uncharacterized protein9.7e-5375.17Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-----KTTLRDELKVNEDDDNGDGESFPKLTK-SSAGC
        MDPRISFSNDF++T+QPLKLENIYREAPVSSDFEF+VKDR MI ADEIFFQG+LLPLKDS R     KTTLRDEL+VNE++D+    SFPK TK SS+ C
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-----KTTLRDELKVNEDDDNGDGESFPKLTK-SSAGC

Query:  WRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        W+E+FGFR+ H   KKQSR+E VLKTV EE++TSVFLHEDLINIARKNG
Subjt:  WRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

A0A6J1D6D4 uncharacterized protein LOC1110177349.0e-7599.3Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFG
        MDPRISFSNDFI+TQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFG
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFG

Query:  FRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        FRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
Subjt:  FRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

A0A6J1FRB6 uncharacterized protein LOC1114477335.7e-5377.03Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGE-SFPKLTKSSAGCW
        MDPRISFSNDF++TQ PLKLENIYREAPVSSDFEF+VKDR MI ADEIF QGRLLPLKDSSR    KTTLRDEL+VNEDDD  + + SFPKLTK+    W
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGE-SFPKLTKSSAGCW

Query:  RERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        +E+FGFRRSH   +KQ R+EGVLKTV EE+K+SVFLHEDLINIARKNG
Subjt:  RERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

A0A6J1IYE6 uncharacterized protein LOC1114817672.3e-5478.23Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWR
        MDPRISFSNDF++TQ PLKLENIYREAPVSSDFEF+VKDR MI ADEIF QGRLLPLKDSSR    KTTLRDEL+VNEDDD  +  SFPKLTK+    W+
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR----KTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWR

Query:  ERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG
        E+FGFRRSH   KKQ R+EGVLKTV EE+K+SVFLHEDLINIARKNG
Subjt:  ERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79060.1 unknown protein1.5e-0528.17Show/hide
Query:  DPRISFSNDFIDTQQPLKLENIYRE--APVSSDFEFTVKDR--SMIPADEIFFQGRLLPLKDSSRKTTL-----RDELKVNEDDDNGDGESFPKLTKSSA
        +PR SFS D            I +E  A  + DFEF +++    M+PADE+F  G+L+  +   + T +     R E+   E    GD  SF       +
Subjt:  DPRISFSNDFIDTQQPLKLENIYRE--APVSSDFEFTVKDR--SMIPADEIFFQGRLLPLKDSSRKTTL-----RDELKVNEDDDNGDGESFPKLTKSSA

Query:  GCWRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSV--FLH
          WR+  G +R      K + +     T P    +S+  FLH
Subjt:  GCWRERFGFRRSHIGPKKQSRSEGVLKTVPEEEKTSV--FLH

AT3G19200.1 unknown protein2.4e-1147.62Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENI-----YREAPVSSDFEFTVKDRSMI-PADEIFFQGRLLPLKDSSRK--TTLRDELKVNEDD
        +D RISFSNDF D+              Y+EAPVSSDF+F V++      ADEIFF G LLPL+ ++++  TTLRDEL   + D
Subjt:  MDPRISFSNDFIDTQQPLKLENI-----YREAPVSSDFEFTVKDRSMI-PADEIFFQGRLLPLKDSSRK--TTLRDELKVNEDD

AT3G50640.1 unknown protein2.1e-1541.13Show/hide
Query:  RISFSNDFIDTQQP---LKLENIYREAPV---SSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-KTTLRDELKVNEDDDNGDGESF---PKLTKSSA-
        RISFSN+F++ +      K  NI   +     S+DF F+V D SMIPADEIF +G++LP K++S    TL +EL   E+    DG +F   P L  SS+ 
Subjt:  RISFSNDFIDTQQP---LKLENIYREAPV---SSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-KTTLRDELKVNEDDDNGDGESF---PKLTKSSA-

Query:  ---GCWRERFGFRRSHIGPKKQSR
           G WRE  G +R+H+  KK  +
Subjt:  ---GCWRERFGFRRSHIGPKKQSR

AT4G34419.1 unknown protein7.1e-1647.46Show/hide
Query:  DPRISFSNDFIDTQQPLKLENIYREAPVSS-DFEFTVKDRSMIPADEIFFQGRLLPLKD----SSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWR
        +PRISFS+ F  T+  +     Y+EAPVSS DFEF V++ SM  ADEIFF G +LPLK+    + R +TLR+EL         DG+S    +K S+G WR
Subjt:  DPRISFSNDFIDTQQPLKLENIYREAPVSS-DFEFTVKDRSMIPADEIFFQGRLLPLKD----SSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWR

Query:  ERFG--FRRSHIGPKKQS
        ER G  F RS    KK S
Subjt:  ERFG--FRRSHIGPKKQS

AT5G66800.1 unknown protein4.6e-1535.34Show/hide
Query:  MDPRISFSNDFIDTQQPLKLENIYREAPV----------SSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-KTTLRDELKVNEDDDNGDGE-------
        M PRISFSNDF++ +   +     R +P+          S +FEF+V + +M+PADE+F +G+LLP K++++ + TLR+EL V ED++ G  +       
Subjt:  MDPRISFSNDFIDTQQPLKLENIYREAPV----------SSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSR-KTTLRDELKVNEDDDNGDGE-------

Query:  ------SFPKLTKSSAGCWRERFGFRRSHIGPK
              S    + SS G W+   G +R+H+G K
Subjt:  ------SFPKLTKSSAGCWRERFGFRRSHIGPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAGAATTTCCTTCTCAAATGACTTTATTGACACTCAACAGCCATTGAAGCTTGAGAACATCTACAGAGAAGCACCTGTTTCTTCTGATTTTGAGTTCACTGT
GAAGGACAGAAGCATGATTCCTGCAGATGAGATTTTCTTTCAGGGGAGGCTGCTGCCATTGAAGGACAGTTCAAGGAAGACAACTTTGAGGGATGAGCTGAAAGTCAATG
AAGATGATGATAATGGTGATGGTGAAAGTTTTCCTAAGCTAACAAAAAGCTCTGCAGGCTGCTGGAGGGAGAGATTTGGTTTCAGGAGATCCCATATTGGGCCAAAGAAA
CAGAGTAGAAGTGAAGGGGTTCTCAAAACTGTACCAGAGGAAGAGAAAACTAGTGTGTTTCTTCATGAGGACCTCATAAATATTGCAAGGAAAAATGGG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCAAGAATTTCCTTCTCAAATGACTTTATTGACACTCAACAGCCATTGAAGCTTGAGAACATCTACAGAGAAGCACCTGTTTCTTCTGATTTTGAGTTCACTGT
GAAGGACAGAAGCATGATTCCTGCAGATGAGATTTTCTTTCAGGGGAGGCTGCTGCCATTGAAGGACAGTTCAAGGAAGACAACTTTGAGGGATGAGCTGAAAGTCAATG
AAGATGATGATAATGGTGATGGTGAAAGTTTTCCTAAGCTAACAAAAAGCTCTGCAGGCTGCTGGAGGGAGAGATTTGGTTTCAGGAGATCCCATATTGGGCCAAAGAAA
CAGAGTAGAAGTGAAGGGGTTCTCAAAACTGTACCAGAGGAAGAGAAAACTAGTGTGTTTCTTCATGAGGACCTCATAAATATTGCAAGGAAAAATGGG
Protein sequenceShow/hide protein sequence
MDPRISFSNDFIDTQQPLKLENIYREAPVSSDFEFTVKDRSMIPADEIFFQGRLLPLKDSSRKTTLRDELKVNEDDDNGDGESFPKLTKSSAGCWRERFGFRRSHIGPKK
QSRSEGVLKTVPEEEKTSVFLHEDLINIARKNG