; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012462 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012462
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionU1 small nuclear ribonucleoprotein 70 kDa
Genome locationscaffold63:881883..882140
RNA-Seq ExpressionMS012462
SyntenyMS012462
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0030619 - U1 snRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036235.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo var. makuwa]1.5e-1562.11Show/hide
Query:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D+    H D D D          R RGQ+D  EG RDQDRYDQY DRM+DDYHYE+G SE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

XP_004143506.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]1.5e-1562.11Show/hide
Query:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D+    H D D D          R RGQ+D  EG RDQDRYDQY DRM+DDYHYE+G SE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

XP_008440701.1 PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo]1.5e-1562.11Show/hide
Query:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D+    H D D D          R RGQ+D  EG RDQDRYDQY DRM+DDYHYE+G SE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

XP_022132461.1 U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]1.7e-1968.04Show/hide
Query:  DRSETEDGLGWND--EHWDRHPDPDQD----------RSRGQF-DNAEG-RDQDRYDQYDRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D  EH  RHPDPD D          R RGQ+ DN EG  DQDRYDQYDRMEDDYHYE+GTSE HD+ERSRD+ +EYRR+ERSHSR
Subjt:  DRSETEDGLGWND--EHWDRHPDPDQD----------RSRGQF-DNAEG-RDQDRYDQYDRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

XP_038881482.1 U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida]1.6e-1765.98Show/hide
Query:  DRSETEDGLGWND--EHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        D +ETEDG GW D  EH  RHPD D D          RSRGQ+D++EG RDQDRYDQY DRMEDDY YE+GTSE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWND--EHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

TrEMBL top hitse value%identityAlignment
A0A0A0KGZ1 RRM domain-containing protein7.2e-1662.11Show/hide
Query:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D+    H D D D          R RGQ+D  EG RDQDRYDQY DRM+DDYHYE+G SE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

A0A1S3B1S2 U1 small nuclear ribonucleoprotein 70 kDa7.2e-1662.11Show/hide
Query:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D+    H D D D          R RGQ+D  EG RDQDRYDQY DRM+DDYHYE+G SE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

A0A5D3CMG9 U1 small nuclear ribonucleoprotein 70 kDa7.2e-1662.11Show/hide
Query:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D+    H D D D          R RGQ+D  EG RDQDRYDQY DRM+DDYHYE+G SE HDRERSRD+ +EY+R+ERSHSR
Subjt:  DRSETEDGLGWNDEHWDRHPDPDQD----------RSRGQFDNAEG-RDQDRYDQY-DRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

A0A6J1BSC4 U1 small nuclear ribonucleoprotein 70 kDa8.2e-2068.04Show/hide
Query:  DRSETEDGLGWND--EHWDRHPDPDQD----------RSRGQF-DNAEG-RDQDRYDQYDRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        DR+ETEDG GW D  EH  RHPDPD D          R RGQ+ DN EG  DQDRYDQYDRMEDDYHYE+GTSE HD+ERSRD+ +EYRR+ERSHSR
Subjt:  DRSETEDGLGWND--EHWDRHPDPDQD----------RSRGQF-DNAEG-RDQDRYDQYDRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

A0A6J1HIB1 U1 small nuclear ribonucleoprotein 70 kDa-like4.6e-1562.5Show/hide
Query:  DRSETEDGLGWNDE--HWDRH-PDPDQD----------RSRGQFDNAEGRDQDRYDQYDRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR
        D  ETEDG GW D+  H  RH PD D D          RSR Q+D+ E   QDRYDQYDRMEDDY YE+GTSE  DRERSRD+ +EYRRTERSHSR
Subjt:  DRSETEDGLGWNDE--HWDRH-PDPDQD----------RSRGQFDNAEGRDQDRYDQYDRMEDDYHYEQGTSE-HDRERSRDVIYEYRRTERSHSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGATCGCAGTGAAACTGAGGATGGTCTTGGGTGGAATGATGAGCATTGGGATAGACACCCAGATCCTGACCAAGACCGAAGCCGAGGGCAATTTGATAATGCAGAAGG
CCGAGACCAAGATCGTTATGATCAGTATGATAGAATGGAGGACGATTATCATTATGAGCAAGGCACTTCTGAACATGATAGAGAGAGGTCTCGTGATGTGATTTATGAAT
ATAGGCGCACTGAAAGATCTCATTCGAGA
mRNA sequenceShow/hide mRNA sequence
TTTGATCGCAGTGAAACTGAGGATGGTCTTGGGTGGAATGATGAGCATTGGGATAGACACCCAGATCCTGACCAAGACCGAAGCCGAGGGCAATTTGATAATGCAGAAGG
CCGAGACCAAGATCGTTATGATCAGTATGATAGAATGGAGGACGATTATCATTATGAGCAAGGCACTTCTGAACATGATAGAGAGAGGTCTCGTGATGTGATTTATGAAT
ATAGGCGCACTGAAAGATCTCATTCGAGA
Protein sequenceShow/hide protein sequence
FDRSETEDGLGWNDEHWDRHPDPDQDRSRGQFDNAEGRDQDRYDQYDRMEDDYHYEQGTSEHDRERSRDVIYEYRRTERSHSR