; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012495 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012495
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnigrin b-like
Genome locationscaffold63:1096372..1096617
RNA-Seq ExpressionMS012495
SyntenyMS012495
Gene Ontology termsNA
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039058.1 nigrin b-like [Cucumis melo var. makuwa]9.2e-1044.33Show/hide
Query:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        KNT  Q+WEATE               CLQ    S D   +V LN C++E K+Q WALY D TI  +V R Y  TS       I++S CEDKP QRW
Subjt:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW

TYJ99749.1 nigrin b-like [Cucumis melo var. makuwa]9.2e-1044.33Show/hide
Query:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        KNT  Q+WEATE               CLQ    S D   +V LN C++E K+Q WALY D TI  +V R Y  TS       I++S CEDKP QRW
Subjt:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW

XP_016901886.1 PREDICTED: nigrin b-like [Cucumis melo]9.2e-1044.33Show/hide
Query:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        KNT  Q+WEATE               CLQ    S D   +V LN C++E K+Q WALY D TI  +V R Y  TS       I++S CEDKP QRW
Subjt:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW

XP_022149159.1 beta-galactoside-specific lectin 3-like [Momordica charantia]1.2e-1451.04Show/hide
Query:  NTTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD---VKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        NT  Q+WEATE L    V+I            +G  +VYLN C K+ KNQ+WALY D TI VD    +  Y  TSQ NPSS+ILVS C+DK TQRW
Subjt:  NTTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD---VKRQYYSTSQGNPSSIILVSYCEDKPTQRW

XP_022149160.1 nigrin b-like [Momordica charantia]3.6e-1452.13Show/hide
Query:  TTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD--VKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        T  Q+WEATE L    V+I            +G  +VYLN C K+ KNQ+WALY D TI VD    R Y  TSQ NPSS+ILVS C+DK TQRW
Subjt:  TTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD--VKRQYYSTSQGNPSSIILVSYCEDKPTQRW

TrEMBL top hitse value%identityAlignment
A0A1S4E0X9 nigrin b-like4.4e-1044.33Show/hide
Query:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        KNT  Q+WEATE               CLQ    S D   +V LN C++E K+Q WALY D TI  +V R Y  TS       I++S CEDKP QRW
Subjt:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW

A0A5A7T854 Nigrin b-like4.4e-1044.33Show/hide
Query:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        KNT  Q+WEATE               CLQ    S D   +V LN C++E K+Q WALY D TI  +V R Y  TS       I++S CEDKP QRW
Subjt:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW

A0A5D3BL95 Nigrin b-like4.4e-1044.33Show/hide
Query:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        KNT  Q+WEATE               CLQ    S D   +V LN C++E K+Q WALY D TI  +V R Y  TS       I++S CEDKP QRW
Subjt:  KNTTFQNWEATE---------------CLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW

A0A6J1D4Y7 nigrin b-like1.7e-1452.13Show/hide
Query:  TTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD--VKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        T  Q+WEATE L    V+I            +G  +VYLN C K+ KNQ+WALY D TI VD    R Y  TSQ NPSS+ILVS C+DK TQRW
Subjt:  TTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD--VKRQYYSTSQGNPSSIILVSYCEDKPTQRW

A0A6J1D675 beta-galactoside-specific lectin 3-like6.0e-1551.04Show/hide
Query:  NTTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD---VKRQYYSTSQGNPSSIILVSYCEDKPTQRW
        NT  Q+WEATE L    V+I            +G  +VYLN C K+ KNQ+WALY D TI VD    +  Y  TSQ NPSS+ILVS C+DK TQRW
Subjt:  NTTFQNWEATECLQVFAVSI------------DGVLYVYLNECSKEIKNQNWALYPDDTICVD---VKRQYYSTSQGNPSSIILVSYCEDKPTQRW

SwissProt top hitse value%identityAlignment
O22415 Ribosome-inactivating protein SNAIf9.2e-0539.66Show/hide
Query:  YVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGN-PSSIILVSYCEDKPTQRW
        +V+L +C      Q WALY D TI V+  R    TS+ + PS +I++  CE    QRW
Subjt:  YVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGN-PSSIILVSYCEDKPTQRW

P33183 Nigrin b1.6e-0430.34Show/hide
Query:  QNWEATECLQVFAVSIDGVLY-----------VYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQG-NPSSIILVSYCEDKPTQRW
        Q W  T  ++    SI G              V++ +C      Q WALY D TI V+  R    T+ G N   +I++  C+  P+QRW
Subjt:  QNWEATECLQVFAVSIDGVLY-----------VYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQG-NPSSIILVSYCEDKPTQRW

Q41358 Ribosome-inactivating protein SNAI9.2e-0539.66Show/hide
Query:  YVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGN-PSSIILVSYCEDKPTQRW
        +V+L +C      Q WALY D TI V+  R    TS+ + PS +I++  CE    QRW
Subjt:  YVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGN-PSSIILVSYCEDKPTQRW

U3KRF8 Seed lectin (Fragments)7.8e-0434.38Show/hide
Query:  DGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPS---SIILVSYCEDKPTQRW
        DG   ++L EC    + Q+WALY D TI VD  R+   T+  +      +I +  C+    QRW
Subjt:  DGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPS---SIILVSYCEDKPTQRW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAATACCACATTCCAGAATTGGGAAGCCACAGAGTGTTTGCAAGTGTTTGCAGTGTCTATAGACGGGGTTCTCTATGTGTATTTGAATGAGTGTAGTAAAGAAATTAA
GAACCAAAATTGGGCACTATATCCCGATGACACTATTTGTGTAGATGTCAAAAGACAATATTACTCGACATCTCAAGGAAATCCATCTTCTATCATCCTTGTGTCATACT
GCGAAGACAAGCCGACACAGCGATGG
mRNA sequenceShow/hide mRNA sequence
AAAAATACCACATTCCAGAATTGGGAAGCCACAGAGTGTTTGCAAGTGTTTGCAGTGTCTATAGACGGGGTTCTCTATGTGTATTTGAATGAGTGTAGTAAAGAAATTAA
GAACCAAAATTGGGCACTATATCCCGATGACACTATTTGTGTAGATGTCAAAAGACAATATTACTCGACATCTCAAGGAAATCCATCTTCTATCATCCTTGTGTCATACT
GCGAAGACAAGCCGACACAGCGATGG
Protein sequenceShow/hide protein sequence
KNTTFQNWEATECLQVFAVSIDGVLYVYLNECSKEIKNQNWALYPDDTICVDVKRQYYSTSQGNPSSIILVSYCEDKPTQRW