; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012515 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012515
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFerredoxin
Genome locationscaffold63:1244692..1245249
RNA-Seq ExpressionMS012515
SyntenyMS012515
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0098588 - bounding membrane of organelle (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR006058 - 2Fe-2S ferredoxin, iron-sulphur binding site
IPR010241 - Ferredoxin [2Fe-2S], plant
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456215.1 PREDICTED: ferredoxin-like [Cucumis melo]5.1e-4067.16Show/hide
Query:  TSFLG----TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDV
        TSFL     T   R   NVGE LFGLQK   R  RVTAMATYKVKLITPSG K + C D +YIL+ AE +GL+LP+SCRAGACSSC GKL SGK+DQS++
Subjt:  TSFLG----TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDV

Query:  SFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF
        SFLD+DQI +GWV+ C+A P+SDVVIETHK EEF
Subjt:  SFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF

XP_022136604.1 ferredoxin-like [Momordica charantia]2.1e-4168.49Show/hide
Query:  TTTALCSPI--TSFL---GTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKL
        +TTAL  PI  TSFL     A  RP  N+G+G+FGL KG SR GRV AMA YKV LITPSGEK V C    YILDAAE  GL+LP+SCRAGACSSCVGK+
Subjt:  TTTALCSPI--TSFL---GTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKL

Query:  KSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG
         SGK+DQSD SFLD+DQ+ EGWVLTC+A P SDVVIETHK  EF G
Subjt:  KSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG

XP_022136605.1 ferredoxin-2-like [Momordica charantia]2.2e-75100Show/hide
Query:  MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKS
        MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKS
Subjt:  MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKS

Query:  GKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG
        GKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG
Subjt:  GKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG

XP_022136608.1 ferredoxin [Momordica charantia]2.1e-4172.5Show/hide
Query:  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWV
        R VSN G+GLFGL KG SR GRVTAMATYKVKLITP GEK   C D  Y+LD AE +G +LP+SCRAG+CSSC GK+ SGK+DQSD SFLD+DQ+EEGWV
Subjt:  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWV

Query:  LTCLASPMSDVVIETHKAEE
        LTC+A P SD+VIETHK EE
Subjt:  LTCLASPMSDVVIETHKAEE

XP_022941964.1 ferredoxin-like [Cucurbita moschata]4.9e-4364.63Show/hide
Query:  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV
        +TTAL +PI  TSFL   +P      RP  NVG+ LFGL+ G SR G +T MA YKVKLITP GEK ++C   DYILDAAE  G++LP+SCRAGACSSC+
Subjt:  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV

Query:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF
        GKLKSGK+DQSD SFLD+ Q+E+GWVLTC+A P SD+VIETHK E F
Subjt:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF

TrEMBL top hitse value%identityAlignment
A0A6J1C4E2 Ferredoxin1.1e-75100Show/hide
Query:  MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKS
        MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKS
Subjt:  MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKS

Query:  GKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG
        GKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG
Subjt:  GKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG

A0A6J1C4S7 Ferredoxin1.0e-4168.49Show/hide
Query:  TTTALCSPI--TSFL---GTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKL
        +TTAL  PI  TSFL     A  RP  N+G+G+FGL KG SR GRV AMA YKV LITPSGEK V C    YILDAAE  GL+LP+SCRAGACSSCVGK+
Subjt:  TTTALCSPI--TSFL---GTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKL

Query:  KSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG
         SGK+DQSD SFLD+DQ+ EGWVLTC+A P SDVVIETHK  EF G
Subjt:  KSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG

A0A6J1C815 Ferredoxin1.0e-4172.5Show/hide
Query:  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWV
        R VSN G+GLFGL KG SR GRVTAMATYKVKLITP GEK   C D  Y+LD AE +G +LP+SCRAG+CSSC GK+ SGK+DQSD SFLD+DQ+EEGWV
Subjt:  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWV

Query:  LTCLASPMSDVVIETHKAEE
        LTC+A P SD+VIETHK EE
Subjt:  LTCLASPMSDVVIETHKAEE

A0A6J1FPZ2 Ferredoxin2.4e-4364.63Show/hide
Query:  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV
        +TTAL +PI  TSFL   +P      RP  NVG+ LFGL+ G SR G +T MA YKVKLITP GEK ++C   DYILDAAE  G++LP+SCRAGACSSC+
Subjt:  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV

Query:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF
        GKLKSGK+DQSD SFLD+ Q+E+GWVLTC+A P SD+VIETHK E F
Subjt:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF

A0A6J1J1D5 Ferredoxin2.4e-4364.63Show/hide
Query:  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV
        +TTAL +PI  TSFL   +P      RP  NVG+ LFGL+ G SR G +T MA YKVKLITP GEK ++C   DYILDAAE  G++LP+SCRAGACSSC+
Subjt:  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV

Query:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF
        GKLKSGK+DQSD SFLD+ Q+E+GWVLTC+A P SD+VIETHK E F
Subjt:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEF

SwissProt top hitse value%identityAlignment
O04090 Ferredoxin-1, chloroplastic5.8e-3959.72Show/hide
Query:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG
        +TAL S I  TSFL       + R  P +N  + LFGL+   +R GRVTAMATYKVK ITP GE+ V+C +  Y+LDAAE  GL+LP+SCRAG+CSSC G
Subjt:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG

Query:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAE
        K+ SG +DQSD SFLD++Q+ EG+VLTC+A P SDVVIETHK E
Subjt:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAE

O04683 Ferredoxin-1, chloroplastic2.2e-3856.16Show/hide
Query:  MTTTTTALCSPITSFLGTARPRPV-----SNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV
        M  TT AL     S     +  P+     +NVG  LFGL+   SR GRVTAMA YKV L+TP G++ ++C D  YILDAAE  G++LP+SCRAG+CSSC 
Subjt:  MTTTTTALCSPITSFLGTARPRPV-----SNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV

Query:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE
        GK+ SG ++Q D SFLD+DQI+EGWVLTC+A P  DV IETHK EE
Subjt:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE

P00221 Ferredoxin-1, chloroplastic7.6e-3957.53Show/hide
Query:  MTTTTTALCSPITSFLGTARPRPV-----SNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV
        M  TTT +    T+F+   +  P+     SN G  LFGL+ G SR GR+T MA YKV L+TP+G     C D  YILDAAE +G++LP+SCRAG+CSSC 
Subjt:  MTTTTTALCSPITSFLGTARPRPV-----SNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCV

Query:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE
        GKLK+G L+Q D SFLD+DQI+EGWVLTC A P+SDV IETHK EE
Subjt:  GKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE

P16972 Ferredoxin-2, chloroplastic1.7e-3859.31Show/hide
Query:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG
        +TAL S I  TSF+       + R  P +N  + LFGL+ G +R GRVTAMATYKVK ITP GE  V+C D  Y+LDAAE  G++LP+SCRAG+CSSC G
Subjt:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG

Query:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE
        K+ SG +DQSD SFLD++QI EG+VLTC A P SDV IETHK E+
Subjt:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE

Q9ZTS2 Ferredoxin, chloroplastic4.9e-3860.98Show/hide
Query:  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWV
        +P+ NVGE LFGL+   +  G+VT MA+YKVKLITP G    DC D+ YILD AE  G +LP+SCRAG+CSSC GK+  G +DQ+D +FLD+DQ+EEGWV
Subjt:  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWV

Query:  LTCLASPMSDVVIETHKAEEFPG
        LTC+A P SDV IETHK  E  G
Subjt:  LTCLASPMSDVVIETHKAEEFPG

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 14.1e-4059.72Show/hide
Query:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG
        +TAL S I  TSFL       + R  P +N  + LFGL+   +R GRVTAMATYKVK ITP GE+ V+C +  Y+LDAAE  GL+LP+SCRAG+CSSC G
Subjt:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG

Query:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAE
        K+ SG +DQSD SFLD++Q+ EG+VLTC+A P SDVVIETHK E
Subjt:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAE

AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein1.5e-1036Show/hide
Query:  DSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE
        +  YIL +AE++ + LP +CR G C+SC  ++KSG+L Q     +  +   +G+ L C+  P SD+ +ET   +E
Subjt:  DSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE

AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein1.2e-3959.31Show/hide
Query:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG
        +TAL S I  TSF+       + R  P +N  + LFGL+ G +R GRVTAMATYKVK ITP GE  V+C D  Y+LDAAE  G++LP+SCRAG+CSSC G
Subjt:  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVG

Query:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE
        K+ SG +DQSD SFLD++QI EG+VLTC A P SDV IETHK E+
Subjt:  KLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE

AT2G27510.1 ferredoxin 36.2e-2855.86Show/hide
Query:  FGLQKGCSRSGRVTAMATYKVKLITPSG-EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMS
        FGL K  + SG  T  A YKVKL+ P G E   +  D  YILDAAE  G++LP+SCRAGACS+C G++ SG +DQSD SFL++  +E+G+VLTC+A P S
Subjt:  FGLQKGCSRSGRVTAMATYKVKLITPSG-EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMS

Query:  DVVIETHKAEE
        D VI THK  E
Subjt:  DVVIETHKAEE

AT5G10000.1 ferredoxin 43.8e-2549.55Show/hide
Query:  FGLQKGCSRSGRVTAMATYKVKLITPSG-EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMS
        FGL       G+V A  + KVKLI+P G E+ ++  +   IL++AE  GLELP+SCR+G C +C GKL SGK+DQS  SFL+E+QI++G++LTC+A P+ 
Subjt:  FGLQKGCSRSGRVTAMATYKVKLITPSG-EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMS

Query:  DVVIETHKAEE
        D V+ THK  +
Subjt:  DVVIETHKAEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATC
CCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGT
TCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGT
GATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCA
ATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGT
TTCCTGGT
mRNA sequenceShow/hide mRNA sequence
AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATC
CCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGT
TCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGT
GATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCA
ATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGT
TTCCTGGT
Protein sequenceShow/hide protein sequence
KIRLAISTSSDFTIQVHVKATRPSSSLQYPNPSPSPSHFSSKMTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDS
DYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG