; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012539 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012539
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold63:1430995..1432205
RNA-Seq ExpressionMS012539
SyntenyMS012539
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133716.1 uncharacterized protein LOC101206733 isoform X1 [Cucumis sativus]8.6e-6790.54Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+SP  SSSDEVTNNS+ S PAEKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        S SYASDFSVLMPGQHIPTFIAQPAPL  PCQREGIYWPSH HNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

XP_008452251.2 PREDICTED: uncharacterized protein LOC103493322 [Cucumis melo]1.6e-6590.54Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+SP  SSSDEVTNNS  S PAEKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        S SYASDFSVLMPGQHIPTFIAQPAPL  PCQREGIYWPSH HNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

XP_022136447.1 uncharacterized protein LOC111008157 isoform X1 [Momordica charantia]2.4e-7798.65Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPSAQTD GQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPN V
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

XP_022983836.1 uncharacterized protein LOC111482330 [Cucurbita maxima]3.6e-6589.19Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTS  SSS  EVTNN A SGP EKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
          SYA+DFSVLMPGQHIPTFIAQPAPL  PCQREG YWPSHDHNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

XP_038906346.1 uncharacterized protein LOC120092185 isoform X1 [Benincasa hispida]4.3e-6689.86Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIG ERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRPTSP  SSSDEVTNNS+ SG AEKF+ PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        S SYASDFSVLMPGQHIPTFIAQPAPL  PCQREGIYWPSH HNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

TrEMBL top hitse value%identityAlignment
A0A0A0L6N7 Uncharacterized protein4.2e-6790.54Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+SP  SSSDEVTNNS+ S PAEKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        S SYASDFSVLMPGQHIPTFIAQPAPL  PCQREGIYWPSH HNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

A0A1S4DZ08 uncharacterized protein LOC1034933227.9e-6690.54Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+SP  SSSDEVTNNS  S PAEKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        S SYASDFSVLMPGQHIPTFIAQPAPL  PCQREGIYWPSH HNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

A0A5D3BTG7 Uncharacterized protein7.9e-6690.54Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFL+MAIFEHLFRP+SP  SSSDEVTNNS  S PAEKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        S SYASDFSVLMPGQHIPTFIAQPAPL  PCQREGIYWPSH HNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

A0A6J1C5I8 uncharacterized protein LOC111008157 isoform X11.2e-7798.65Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPSAQTD GQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPN V
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
        SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

A0A6J1J0H1 uncharacterized protein LOC1114823301.8e-6589.19Show/hide
Query:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV
        MSEIGSERSKSWNIYTTPDQSPS+QT IGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTS  SSS  EVTNN A SGP EKFA PNTV
Subjt:  MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTV

Query:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP
          SYA+DFSVLMPGQHIPTFIAQPAPL  PCQREG YWPSHDHNFSGP
Subjt:  SRSYASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09812.1 unknown protein4.3e-2451.49Show/hide
Query:  RSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSA-GSGPAEKFA-CPNTVSRSYA
        +S SW+IY +P +  S       E PW++  +SMNAISFGFVATAILISMFLIMAIFEHLFRP +    S  ++      GS   +K A   + V  S  
Subjt:  RSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSA-GSGPAEKFA-CPNTVSRSYA

Query:  SDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWP
         D SV+MPG+ +P+ IA PAPL  PC+REGI+WP
Subjt:  SDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWP

AT1G11120.1 unknown protein3.0e-1739.24Show/hide
Query:  AQTDIGQEAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDE--------VTNNSAGSGPAEK--------------FACPNTV
        A  ++ +E PWK+ F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++SD         + +    +G A K              F+    +
Subjt:  AQTDIGQEAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDE--------VTNNSAGSGPAEK--------------FACPNTV

Query:  SRS------------YASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFS
         +S            Y++  SVLMPG  IPTFIA PA  PVPC  + I    H H  S
Subjt:  SRS------------YASDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFS

AT1G11120.2 unknown protein7.6e-2145.45Show/hide
Query:  AQTDIGQEAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDE--------VTNNSAGSGPAEKFACPNTVSRSYASDFSVLMPG
        A  ++ +E PWK+ F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++SD         + +    +G A K    +     Y++  SVLMPG
Subjt:  AQTDIGQEAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDE--------VTNNSAGSGPAEKFACPNTVSRSYASDFSVLMPG

Query:  QHIPTFIAQPAPLPVPCQREGIYWPSHDHNFS
          IPTFIA PA  PVPC  + I    H H  S
Subjt:  QHIPTFIAQPAPLPVPCQREGIYWPSHDHNFS

AT1G58007.1 unknown protein1.5e-2148.53Show/hide
Query:  SERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTVSRSYA
        S   ++W+IY T D S                GSSMNAISFGFVATAILI MF+IMAI EHLFR      SSS +V ++S     AEK +     +    
Subjt:  SERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTVSRSYA

Query:  SDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSH
        SD SV+MPG  +P+++A PAP   PC+REGI WPSH
Subjt:  SDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSH

AT1G58007.2 unknown protein1.5e-2148.53Show/hide
Query:  SERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTVSRSYA
        S   ++W+IY T D S                GSSMNAISFGFVATAILI MF+IMAI EHLFR      SSS +V ++S     AEK +     +    
Subjt:  SERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTVSRSYA

Query:  SDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSH
        SD SV+MPG  +P+++A PAP   PC+REGI WPSH
Subjt:  SDFSVLMPGQHIPTFIAQPAPLPVPCQREGIYWPSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGATTGGGAGTGAAAGATCAAAGTCATGGAACATTTACACAACTCCAGACCAGAGCCCATCAGCTCAAACAGACATTGGTCAGGAAGCTCCTTGGAAGAACTT
TGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCCATCTTTGAGCATCTGTTCAGACCAACTTCTCCTC
TCTCCTCCTCCTCTGATGAAGTCACCAACAACTCTGCTGGCTCGGGTCCGGCCGAGAAATTCGCTTGTCCGAATACGGTGTCAAGATCATATGCATCTGATTTCTCAGTG
TTGATGCCAGGTCAGCACATCCCCACTTTCATTGCCCAGCCAGCTCCTCTGCCAGTGCCATGCCAAAGAGAGGGGATCTATTGGCCTTCTCATGACCATAATTTTTCAGG
TCCT
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAGATTGGGAGTGAAAGATCAAAGTCATGGAACATTTACACAACTCCAGACCAGAGCCCATCAGCTCAAACAGACATTGGTCAGGAAGCTCCTTGGAAGAACTT
TGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCCATCTTTGAGCATCTGTTCAGACCAACTTCTCCTC
TCTCCTCCTCCTCTGATGAAGTCACCAACAACTCTGCTGGCTCGGGTCCGGCCGAGAAATTCGCTTGTCCGAATACGGTGTCAAGATCATATGCATCTGATTTCTCAGTG
TTGATGCCAGGTCAGCACATCCCCACTTTCATTGCCCAGCCAGCTCCTCTGCCAGTGCCATGCCAAAGAGAGGGGATCTATTGGCCTTCTCATGACCATAATTTTTCAGG
TCCT
Protein sequenceShow/hide protein sequence
MSEIGSERSKSWNIYTTPDQSPSAQTDIGQEAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPLSSSSDEVTNNSAGSGPAEKFACPNTVSRSYASDFSV
LMPGQHIPTFIAQPAPLPVPCQREGIYWPSHDHNFSGP