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MS012609 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012609
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Genome locationscaffold63:2026197..2026515
RNA-Seq ExpressionMS012609
SyntenyMS012609
Gene Ontology termsGO:0019684 - photosynthesis, light reaction (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (molecular function)
GO:0048038 - quinone binding (molecular function)
InterPro domainsIPR001694 - NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QHB76020.1 NADH dehydrogenase subunit 1 [Cucumis melo subsp. melo]1.4e-3483.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

YP_009317441.1 NADH dehydrogenase subunit 1 [Coccinia grandis]1.4e-3483.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

YP_009738258.1 NADH dehydrogenase subunit 1 [Siraitia siamensis]1.4e-3483.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

YP_009752545.1 NADH dehydrogenase subunit A [Trichosanthes tubiflora]1.4e-3483.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

YP_009752884.1 NADH dehydrogenase subunit A [Baijiania yunnanensis]1.4e-3483.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

TrEMBL top hitse value%identityAlignment
A0A2Z2CG87 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic6.7e-3583.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

A0A6C0U9F1 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic6.7e-3583.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

A0A6H0EQZ3 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic6.7e-3583.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

A0A6H0ERM6 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic6.7e-3583.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

A0A6H0EVM4 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic6.7e-3583.04Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA LHI VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

SwissProt top hitse value%identityAlignment
A0A390 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic1.7e-3579.46Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL +LQALADGTKLLFKENL PSRGD RLF   PS+ VISI LSYSVI FGYRLVLA L I VFLWIAISS+A    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

Q06R75 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic3.8e-3577.68Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL +LQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRL+L  L I VFLWIA+SS+A    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

Q09FZ1 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic8.4e-3577.68Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL +LQALADGTKLLFKE+L PSRGDTRLF   PS+ +ISI LSYSVI FGYRLVLA L I VFLWIAISS+A    L+S YGSNNKYSF GGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

Q1KXQ8 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic1.7e-3579.46Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL +LQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSY VI FGYRLVLA L I VFLWIAISS+A    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

Q2QD36 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic2.6e-3682.14Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL VLQALADGTKLLFKENL PSRGDTRLF   PS+ VISI LSYSVI FGYRLVLA L I VFLWIAISSVA    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

Arabidopsis top hitse value%identityAlignment
ATCG01100.1 NADH dehydrogenase family protein7.3e-3475Show/hide
Query:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA
        AGPL +LQALADGTKLLFKENL PSRG+T LF   PS+ VISI LSYSVI F   LVLA L+I +FLWIAISS+A    L+S YGSNNKYSFLGGLR AA
Subjt:  AGPLRVLQALADGTKLLFKENLPPSRGDTRLFR--PSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AA

Query:  QSISYEILLTLC
        QSISYEI LTLC
Subjt:  QSISYEILLTLC

ATMG00516.1 NADH dehydrogenase 1C3.3e-1040.91Show/hide
Query:  GPLRVLQALADGTKLLFKENLPPSRGDTRLFRPS-VVVISISL-SYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AAQ
        G   +LQ LADG+KL+ KE + PS  +  LFR + V    +SL + +V+ F Y +VL+  +I +    AISS+     +++   SN+KY+FLG LR AAQ
Subjt:  GPLRVLQALADGTKLLFKENLPPSRGDTRLFRPS-VVVISISL-SYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AAQ

Query:  SISYEILLTL
         +SYE+ + L
Subjt:  SISYEILLTL

ATMG01120.1 NADH dehydrogenase 1B3.3e-1040.91Show/hide
Query:  GPLRVLQALADGTKLLFKENLPPSRGDTRLFRPS-VVVISISL-SYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AAQ
        G   +LQ LADG+KL+ KE + PS  +  LFR + V    +SL + +V+ F Y +VL+  +I +    AISS+     +++   SN+KY+FLG LR AAQ
Subjt:  GPLRVLQALADGTKLLFKENLPPSRGDTRLFRPS-VVVISISL-SYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AAQ

Query:  SISYEILLTL
         +SYE+ + L
Subjt:  SISYEILLTL

ATMG01275.1 NADH dehydrogenase 1A3.3e-1040.91Show/hide
Query:  GPLRVLQALADGTKLLFKENLPPSRGDTRLFRPS-VVVISISL-SYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AAQ
        G   +LQ LADG+KL+ KE + PS  +  LFR + V    +SL + +V+ F Y +VL+  +I +    AISS+     +++   SN+KY+FLG LR AAQ
Subjt:  GPLRVLQALADGTKLLFKENLPPSRGDTRLFRPS-VVVISISL-SYSVISFGYRLVLAYLHIVVFLWIAISSVA----LLSRYGSNNKYSFLGGLR-AAQ

Query:  SISYEILLTL
         +SYE+ + L
Subjt:  SISYEILLTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTGGTCCTTTGAGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAATTTACCTCCATCCAGAGGTGATACTCGTTTATTCAGGCCTTCCGTAGT
AGTCATATCAATTTCACTAAGCTATTCAGTAATTTCTTTTGGTTATCGCCTTGTTTTAGCCTATCTCCATATCGTTGTTTTTTTATGGATCGCTATTTCAAGTGTTGCTC
TCCTGTCACGATATGGATCCAATAATAAATATTCTTTTTTAGGTGGTCTACGAGCTGCTCAATCAATTAGTTATGAAATACTGTTAACTCTATGT
mRNA sequenceShow/hide mRNA sequence
GCTGGTCCTTTGAGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAATTTACCTCCATCCAGAGGTGATACTCGTTTATTCAGGCCTTCCGTAGT
AGTCATATCAATTTCACTAAGCTATTCAGTAATTTCTTTTGGTTATCGCCTTGTTTTAGCCTATCTCCATATCGTTGTTTTTTTATGGATCGCTATTTCAAGTGTTGCTC
TCCTGTCACGATATGGATCCAATAATAAATATTCTTTTTTAGGTGGTCTACGAGCTGCTCAATCAATTAGTTATGAAATACTGTTAACTCTATGT
Protein sequenceShow/hide protein sequence
AGPLRVLQALADGTKLLFKENLPPSRGDTRLFRPSVVVISISLSYSVISFGYRLVLAYLHIVVFLWIAISSVALLSRYGSNNKYSFLGGLRAAQSISYEILLTLC