; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012610 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012610
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationscaffold63:2028894..2029235
RNA-Seq ExpressionMS012610
SyntenyMS012610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK14854.1 vegetative cell wall protein gp1 [Cucumis melo var. makuwa]7.7e-1569.67Show/hide
Query:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA
        PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   PT   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA
Subjt:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA

Query:  TISRAVMAGGAVAGAFLAVVFA
        ++SR +M GGAVAGAFLA++FA
Subjt:  TISRAVMAGGAVAGAFLAVVFA

XP_008455676.1 PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]7.7e-1569.67Show/hide
Query:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA
        PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   PT   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA
Subjt:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA

Query:  TISRAVMAGGAVAGAFLAVVFA
        ++SR +M GGAVAGAFLA++FA
Subjt:  TISRAVMAGGAVAGAFLAVVFA

XP_022929543.1 classical arabinogalactan protein 9-like [Cucurbita moschata]6.1e-2075.22Show/hide
Query:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG
        PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSASPP+ PP    GP+A P PN PPPPP  NGAAT+SR VM G
Subjt:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG

Query:  GAVAGAFLAVVFA
        GAVAGA LA+VFA
Subjt:  GAVAGAFLAVVFA

XP_022984561.1 classical arabinogalactan protein 4-like [Cucurbita maxima]6.7e-1974.34Show/hide
Query:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG
        PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSASPP+ PP     P+A P PN PPPPP  NGAAT+SR VM G
Subjt:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG

Query:  GAVAGAFLAVVFA
        GAVAGA LA+VFA
Subjt:  GAVAGAFLAVVFA

XP_023552891.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]8.8e-1972.32Show/hide
Query:  PATPPPAATPPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGG
        PATPPPAATPP   PPA TPPP+ PPS PP+ PP++P +SPTPPPKEGPA SPTPSSASPP+ PP    GP+A P PN PPPPP  NGAAT+SR VM GG
Subjt:  PATPPPAATPPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGG

Query:  AVAGAFLAVVFA
        AVAGA LA+VFA
Subjt:  AVAGAFLAVVFA

TrEMBL top hitse value%identityAlignment
A0A0A0L0L1 Uncharacterized protein6.4e-1569.67Show/hide
Query:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA
        PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   PT   +SPP+PPP    PT+ P  GPSP  PPPPPEGNGAA
Subjt:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA

Query:  TISRAVMAGGAVAGAFLAVVFA
        ++SR +M GGAVAGAFLA+VFA
Subjt:  TISRAVMAGGAVAGAFLAVVFA

A0A1S3C1K1 vegetative cell wall protein gp13.7e-1569.67Show/hide
Query:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA
        PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   PT   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA
Subjt:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA

Query:  TISRAVMAGGAVAGAFLAVVFA
        ++SR +M GGAVAGAFLA++FA
Subjt:  TISRAVMAGGAVAGAFLAVVFA

A0A5D3CV77 Vegetative cell wall protein gp13.7e-1569.67Show/hide
Query:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA
        PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   PT   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA
Subjt:  PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAA

Query:  TISRAVMAGGAVAGAFLAVVFA
        ++SR +M GGAVAGAFLA++FA
Subjt:  TISRAVMAGGAVAGAFLAVVFA

A0A6J1ESF0 classical arabinogalactan protein 9-like3.0e-2075.22Show/hide
Query:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG
        PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSASPP+ PP    GP+A P PN PPPPP  NGAAT+SR VM G
Subjt:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG

Query:  GAVAGAFLAVVFA
        GAVAGA LA+VFA
Subjt:  GAVAGAFLAVVFA

A0A6J1J5L5 classical arabinogalactan protein 4-like3.3e-1974.34Show/hide
Query:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG
        PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSASPP+ PP     P+A P PN PPPPP  NGAAT+SR VM G
Subjt:  PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAG

Query:  GAVAGAFLAVVFA
        GAVAGA LA+VFA
Subjt:  GAVAGAFLAVVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCACCACCTGCCACTCCACCACCGGCGGCGACCCCACCGGCCACCCCACCACCGGCGGCGACCCCACCTCCATCATCACCGCCGAGCCAACCTCCGTCACCGCCGCCGTC
TGCACCCAACTCCTCTCCCACTCCGCCACCAAAGGAGGGTCCCGCCGTATCTCCGACTCCATCCTCCGCCTCACCACCGGCACCGCCCCCGGGCCCCACTTCCGGCCCGG
CCGCCGGCCCGTCACCTAACATGCCACCACCCCCACCGGAAGGAAATGGTGCGGCCACCATTAGCCGGGCAGTCATGGCCGGCGGTGCGGTGGCCGGAGCTTTCTTGGCG
GTGGTGTTCGCT
mRNA sequenceShow/hide mRNA sequence
CCACCACCTGCCACTCCACCACCGGCGGCGACCCCACCGGCCACCCCACCACCGGCGGCGACCCCACCTCCATCATCACCGCCGAGCCAACCTCCGTCACCGCCGCCGTC
TGCACCCAACTCCTCTCCCACTCCGCCACCAAAGGAGGGTCCCGCCGTATCTCCGACTCCATCCTCCGCCTCACCACCGGCACCGCCCCCGGGCCCCACTTCCGGCCCGG
CCGCCGGCCCGTCACCTAACATGCCACCACCCCCACCGGAAGGAAATGGTGCGGCCACCATTAGCCGGGCAGTCATGGCCGGCGGTGCGGTGGCCGGAGCTTTCTTGGCG
GTGGTGTTCGCT
Protein sequenceShow/hide protein sequence
PPPATPPPAATPPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLA
VVFA