; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS012624 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012624
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L29, chloroplastic
Genome locationscaffold63:2141108..2143095
RNA-Seq ExpressionMS012624
SyntenyMS012624
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR036049 - Ribosomal protein L29/L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136355.1 50S ribosomal protein L29, chloroplastic [Momordica charantia]2.6e-75100Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022941582.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata]1.4e-6589.88Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022977189.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]3.2e-6589.29Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022985118.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]5.4e-6588.69Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPS+V++P+  LSSTSKSSF GLQIR PFS RV  K  C G RNS VVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_038903244.1 50S ribosomal protein L29, chloroplastic [Benincasa hispida]2.0e-6791.67Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSTVS+P  VL+STSKSSF GLQIR PFS RV  KT C G RNSSVVMMAKREEELKEIRAK+TEEI EEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

TrEMBL top hitse value%identityAlignment
A0A6J1C3N4 50S ribosomal protein L29, chloroplastic1.2e-75100Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1EMX4 50S ribosomal protein L29, chloroplastic-like3.2e-6387.2Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPS+V++P+  LSSTSKSSF GLQIR PFS RV  K  C G RNS VVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA

A0A6J1FMW5 50S ribosomal protein L29, chloroplastic-like6.8e-6689.88Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1IQR3 50S ribosomal protein L29, chloroplastic-like1.5e-6589.29Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1JCM6 50S ribosomal protein L29, chloroplastic-like2.6e-6588.69Show/hide
Query:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPS+V++P+  LSSTSKSSF GLQIR PFS RV  K  C G RNS VVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

SwissProt top hitse value%identityAlignment
P82248 50S ribosomal protein L29, chloroplastic1.3e-3760Show/hide
Query:  ASPSTVSLPSTVLSS-TSKSSFIGLQIRS---PFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSS
        ++P +  L S   S+  +KSSF GL++ S     S+R+  +T       SSVV+M K+E+ELKE+R KT E++NEE++ LKGEL MLRLQ+SAR  FK S
Subjt:  ASPSTVSLPSTVLSS-TSKSSFIGLQIRS---PFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSS

Query:  EFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS
        +F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Subjt:  EFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS

Q49ZG0 50S ribosomal protein L292.5e-0448.39Show/hide
Query:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG
        KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE+G
Subjt:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG

Q4L8A6 50S ribosomal protein L295.5e-0449.18Show/hide
Query:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE
        KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIEE
Subjt:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE

Q9FJP3 50S ribosomal protein L29, chloroplastic3.1e-4767.86Show/hide
Query:  MINLSIASPSTVSL--PSTVLSSTSKSSFIGLQIRSPFSVRV-AAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M++LSIA+P T ++    T  ++++ SSF G++I+   S RV AA T  + S   SVVMM+KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MINLSIASPSTVSL--PSTVLSSTSKSSFIGLQIRSPFSVRV-AAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE

Q9SWI6 50S ribosomal protein L29, chloroplastic2.4e-3657.86Show/hide
Query:  INLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVR---VAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNE
        ++L+ ASP   S+P  + +    ++F+ +++    + R   +A  +  A  R +++V MAKRE+EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR E
Subjt:  INLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVR---VAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNE

Query:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE
        FK+SEF RMRKRIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Subjt:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE

Arabidopsis top hitse value%identityAlignment
AT5G65220.1 Ribosomal L29 family protein2.2e-4867.86Show/hide
Query:  MINLSIASPSTVSL--PSTVLSSTSKSSFIGLQIRSPFSVRV-AAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M++LSIA+P T ++    T  ++++ SSF G++I+   S RV AA T  + S   SVVMM+KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MINLSIASPSTVSL--PSTVLSSTSKSSFIGLQIRSPFSVRV-AAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAACCTCTCTATTGCTTCGCCTTCTACCGTTTCCCTCCCTTCTACAGTTCTTAGCTCAACCTCCAAATCCTCCTTCATTGGCCTTCAGATCCGTTCTCCATTTTC
GGTTCGCGTTGCTGCTAAAACGACATGTGCCGGAAGCCGCAATTCGTCTGTGGTAATGATGGCGAAGAGAGAGGAGGAATTGAAGGAAATCAGAGCCAAAACTACTGAGG
AAATAAACGAGGAGGTGGTCGATCTCAAGGGCGAGCTCCTTATGCTTCGGCTTCAGAAATCAGCTCGAAATGAGTTTAAGTCCAGCGAATTCCGTCGCATGCGCAAACGG
ATTGCTCGGATGCTTACTGTAAAACGTGAAAGAGAGATTGAGGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGCATTGTTGTAAGACC
ACCTCCATCTCTGAAGAAGTTGAGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCT
mRNA sequenceShow/hide mRNA sequence
ATGATAAACCTCTCTATTGCTTCGCCTTCTACCGTTTCCCTCCCTTCTACAGTTCTTAGCTCAACCTCCAAATCCTCCTTCATTGGCCTTCAGATCCGTTCTCCATTTTC
GGTTCGCGTTGCTGCTAAAACGACATGTGCCGGAAGCCGCAATTCGTCTGTGGTAATGATGGCGAAGAGAGAGGAGGAATTGAAGGAAATCAGAGCCAAAACTACTGAGG
AAATAAACGAGGAGGTGGTCGATCTCAAGGGCGAGCTCCTTATGCTTCGGCTTCAGAAATCAGCTCGAAATGAGTTTAAGTCCAGCGAATTCCGTCGCATGCGCAAACGG
ATTGCTCGGATGCTTACTGTAAAACGTGAAAGAGAGATTGAGGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGCATTGTTGTAAGACC
ACCTCCATCTCTGAAGAAGTTGAGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCT
Protein sequenceShow/hide protein sequence
MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKR
IARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA