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MS012634 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012634
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide-like helical
Genome locationscaffold63:2226570..2226935
RNA-Seq ExpressionMS012634
SyntenyMS012634
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]6.3e-2357.14Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG
        MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +      D  F G   ++ + DG H   GI  ++S+ IEK+A +G
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG

Query:  LNSERIMVRAILGFLMVMT
        +NS RI+VR ILGFLMVMT
Subjt:  LNSERIMVRAILGFLMVMT

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]3.3e-3262.5Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG----DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDG
        MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+D++  NVTST +       GFF    R DGG    HCFWGILC++S+S+EK+A +G
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG----DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDG

Query:  LNSERIMVRAILGFLMVMTIKIITANRS
        ++S RI+VR ILGFL+V  +KII+A+ S
Subjt:  LNSERIMVRAILGFLMVMTIKIITANRS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-3262.5Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG----DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDG
        MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+D++  NVTST +       GFF    R DGG    HCFWGILC++S+S+EK+A +G
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG----DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDG

Query:  LNSERIMVRAILGFLMVMTIKIITANRS
        ++S RI+VR ILGFL+V  +KII+A+ S
Subjt:  LNSERIMVRAILGFLMVMTIKIITANRS

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.3e-2557.36Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG
        MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +      D  F G   ++ + DG     GI  ++S+ IEK+A +G
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG

Query:  LNSERIMVRAILGFLMVMTIKIITANRSK
        +NS RI+VR ILGFLMVMT+KII+A RSK
Subjt:  LNSERIMVRAILGFLMVMTIKIITANRSK

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]9.1e-2253.28Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMV
        MSVSLEALAMAG+DSNEWA+DAEEWER EME  +PPHLLADED++E+E++     T        +G G G  C   I+ ++ +  EK+  + L+S  I+ 
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMV

Query:  RAILGFLMVMTIKIITANRSKS
         A++GFLM MTIKII + RSKS
Subjt:  RAILGFLMVMTIKIITANRSKS

TrEMBL top hitse value%identityAlignment
A0A0A0KWE7 Uncharacterized protein1.6e-2757.14Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEE-EVNVTSTTTGDV---------GFFGKNGRGDG--GHCFWGILCNMSRSIEKK
        MSVSLEALAMAG+DSNEWA+DAEEWER E++  VPPHLLADE++DE+ + +VT++T  +          G+ G++ + DG  GH   GI C++S+ IEK+
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEE-EVNVTSTTTGDV---------GFFGKNGRGDG--GHCFWGILCNMSRSIEKK

Query:  AYDGLNSERIMVRAILGFLMVMTIKIITANRSK
        A +G++S RI+VR ILGFLMVMT+KII+A RSK
Subjt:  AYDGLNSERIMVRAILGFLMVMTIKIITANRSK

A0A5A7TS68 Tetratricopeptide-like helical3.1e-2357.14Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG
        MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +      D  F G   ++ + DG H   GI  ++S+ IEK+A +G
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG

Query:  LNSERIMVRAILGFLMVMT
        +NS RI+VR ILGFLMVMT
Subjt:  LNSERIMVRAILGFLMVMT

A0A5D3CZU0 Tetratricopeptide-like helical1.1e-2557.36Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG
        MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +      D  F G   ++ + DG     GI  ++S+ IEK+A +G
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG-----DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDG

Query:  LNSERIMVRAILGFLMVMTIKIITANRSK
        +NS RI+VR ILGFLMVMT+KII+A RSK
Subjt:  LNSERIMVRAILGFLMVMTIKIITANRSK

A0A6J1FX98 uncharacterized protein LOC1114478804.4e-2253.28Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMV
        MSVSLEALAMAG+DSNEWA+DAEEWER EME  +PPHLLADED++E+E++     T        +G G G  C   I+ ++ +  EK+  + L+S  I+ 
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMV

Query:  RAILGFLMVMTIKIITANRSKS
         A++GFLM MTIKII + RSKS
Subjt:  RAILGFLMVMTIKIITANRSKS

A0A7J9KXJ3 Uncharacterized protein9.5e-0937.61Show/hide
Query:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGD---GGHCFWGILCNMSRSIEKKAYDGLNSER
        MSVS+EALAMAG+D NEW +D E+WE  +     PPHLLA+E+E EE   V    T  +G      R +   GG C          S+ KK      S +
Subjt:  MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGD---GGHCFWGILCNMSRSIEKKAYDGLNSER

Query:  IMVRAILGFLMVMTIKI
        +M++  +  LM++ I +
Subjt:  IMVRAILGFLMVMTIKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein2.2e-0554.55Show/hide
Query:  LEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEE
        +EALAMAG+D  EW +  EEWE    E+ VP HLLAD+ ++EE+
Subjt:  LEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCA
TTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCT
TTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATG
ACAATCAAGATAATAACTGCGAACAGATCCAAGTCT
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCA
TTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCT
TTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATG
ACAATCAAGATAATAACTGCGAACAGATCCAAGTCT
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVM
TIKIITANRSKS