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MS012635 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012635
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide-like helical
Genome locationscaffold63:2228870..2229262
RNA-Seq ExpressionMS012635
SyntenyMS012635
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]7.7e-2756.69Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL
        VSLEALAMAG+ S+ WAMDAEEWERNE EN V PPH LLADED+D+ ++TST  N  FP  G F S RR+D GA  ++CF  I+C    KS+EKRA N +
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL

Query:  RSMGTMVGAIVGFLMVMTTKIITSQGS
         S+  +V  I+GFL+V   KII++  S
Subjt:  RSMGTMVGAIVGFLMVMTTKIITSQGS

KAG6600647.1 hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2358.91Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL
        VSLEALAMAG+DS+  AMDAEEWERNE E + IPPH LLADED +E +M++     KFPA     S  RKD+G GGV C P IM  + RK  EKR  N L
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL

Query:  RSMGTMVGAIVGFLMVMTTKIITSQGSKS
         SM  +  A+VGFLM MT KII S+ SKS
Subjt:  RSMGTMVGAIVGFLMVMTTKIITSQGSKS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-2655.91Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL
        VSLEALAMAG+ S+ WAMDAEEWERNE EN V PPH LLADED+D+ ++TST  N  FP  G F S  R+D GA  ++CF  I+C    KS+EKRA N +
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL

Query:  RSMGTMVGAIVGFLMVMTTKIITSQGS
         S+  +V  I+GFL+V   KII++  S
Subjt:  RSMGTMVGAIVGFLMVMTTKIITSQGS

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]4.4e-2252.71Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNF
        VSLEALAMAG+DS+ W MDA+EWERNE +  V+PPHLL  +ED+++G+ +TST  N  F   G FG  RR+D  A G      I      K IEKRA N 
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNF

Query:  LRSMGTMVGAIVGFLMVMTTKIITSQGSK
        + S+  +V  I+GFLMVMT KII++Q SK
Subjt:  LRSMGTMVGAIVGFLMVMTTKIITSQGSK

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.1e-2560.47Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL
        VSLEALAMAG+DS+ WAMDAEEWERNE E   IPPH LLADED++E +M++     KFPA     S  RKDDG GGV C P IM  + RK  EKR  N L
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL

Query:  RSMGTMVGAIVGFLMVMTTKIITSQGSKS
         SM  +  A+VGFLM MT KII S+ SKS
Subjt:  RSMGTMVGAIVGFLMVMTTKIITSQGSKS

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein7.1e-1051.52Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERN--ETEN-HVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRA
        VSLEALAMAG+DS+ WAMDAEEW+ N  + EN  +IPPH LLADEDE+              A  L  SG RKDDG   V+C         RK +EKRA
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERN--ETEN-HVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRA

A0A0A0KWE7 Uncharacterized protein1.6e-2253.73Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD---MTSTTGNCKFPAVGLFGSGRRKD---DGAGGVYCFPAIMCQYFRKSIEK
        VSLEALAMAG+DS+ WAMDAEEWERNE +  V+PPHLL  +ED+++GD    TST  N  FP  G F   R +D   DG  G +    I C    K IEK
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD---MTSTTGNCKFPAVGLFGSGRRKD---DGAGGVYCFPAIMCQYFRKSIEK

Query:  RAWNFLRSMGTMVGAIVGFLMVMTTKIITSQGSK
        RA N + S+  +V  I+GFLMVMT KII++Q SK
Subjt:  RAWNFLRSMGTMVGAIVGFLMVMTTKIITSQGSK

A0A5A7TS68 Tetratricopeptide-like helical7.6e-2051.24Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNF
        VSLEALAMAG+DS+ W MDA+EWERNE +  V+PPHLL  +ED+++G+ +TST  N  F   G FG  RR+D  A G +    I      K IEKRA N 
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNF

Query:  LRSMGTMVGAIVGFLMVMTTK
        + S+  +V  I+GFLMVMT +
Subjt:  LRSMGTMVGAIVGFLMVMTTK

A0A5D3CZU0 Tetratricopeptide-like helical2.1e-2252.71Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNF
        VSLEALAMAG+DS+ W MDA+EWERNE +  V+PPHLL  +ED+++G+ +TST  N  F   G FG  RR+D  A G      I      K IEKRA N 
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNF

Query:  LRSMGTMVGAIVGFLMVMTTKIITSQGSK
        + S+  +V  I+GFLMVMT KII++Q SK
Subjt:  LRSMGTMVGAIVGFLMVMTTKIITSQGSK

A0A6J1FX98 uncharacterized protein LOC1114478805.4e-2660.47Show/hide
Query:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL
        VSLEALAMAG+DS+ WAMDAEEWERNE E   IPPH LLADED++E +M++     KFPA     S  RKDDG GGV C P IM  + RK  EKR  N L
Subjt:  VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFL

Query:  RSMGTMVGAIVGFLMVMTTKIITSQGSKS
         SM  +  A+VGFLM MT KII S+ SKS
Subjt:  RSMGTMVGAIVGFLMVMTTKIITSQGSKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein1.5e-0450Show/hide
Query:  LEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDE
        +EALAMAG+D   W +  EEWE  E+   V+P HLL  D  E+E
Subjt:  LEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAATGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATGGATTCTGATTTGTGGGCTATGGATGCTGAAGAATGGGAAAGAAATGAGACCGAGAATCATGTCATTCCGCC
GCATTTGTTATTAGCGGACGAGGACGAAGACGAAGGAGACATGACGAGTACGACGGGTAACTGTAAGTTTCCGGCCGTTGGATTATTCGGCAGCGGGCGGAGGAAAGATG
ACGGTGCTGGTGGTGTGTACTGCTTTCCGGCGATTATGTGCCAATATTTCAGAAAAAGCATAGAGAAGAGAGCGTGGAATTTTCTGAGGTCAATGGGAACAATGGTCGGA
GCTATTGTAGGGTTTCTTATGGTGATGACTACGAAGATAATAACTTCACAAGGATCCAAGTCC
mRNA sequenceShow/hide mRNA sequence
AAAATGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATGGATTCTGATTTGTGGGCTATGGATGCTGAAGAATGGGAAAGAAATGAGACCGAGAATCATGTCATTCCGCC
GCATTTGTTATTAGCGGACGAGGACGAAGACGAAGGAGACATGACGAGTACGACGGGTAACTGTAAGTTTCCGGCCGTTGGATTATTCGGCAGCGGGCGGAGGAAAGATG
ACGGTGCTGGTGGTGTGTACTGCTTTCCGGCGATTATGTGCCAATATTTCAGAAAAAGCATAGAGAAGAGAGCGTGGAATTTTCTGAGGTCAATGGGAACAATGGTCGGA
GCTATTGTAGGGTTTCTTATGGTGATGACTACGAAGATAATAACTTCACAAGGATCCAAGTCC
Protein sequenceShow/hide protein sequence
KMVSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVG
AIVGFLMVMTTKIITSQGSKS