CuGenDBv2

Gene ID	MS012645
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Histone H3
Genome location	scaffold63:2283487..2284209
RNA-Seq Expression	MS012645
Synteny	MS012645
Gene Ontology terms	GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR000164 - Histone H3/CENP-A IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6585308.1 O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-65

99.28

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

XP_022951614.1 histone H3.3 isoform X2 [Cucurbita moschata]

2.0e-65

99.28

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

XP_022997287.1 histone H3.3 isoform X1 [Cucurbita maxima]

2.0e-65

99.28

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

XP_023002730.1 histone H3.3 isoform X1 [Cucurbita maxima]

2.0e-65

99.28

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

XP_027074927.1 histone H3.3 isoform X1 [Coffea arabica]

1.2e-65

100

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

TrEMBL top hits

e value

%identity

Alignment

A0A2K3NFE2 Histone H3

1.3e-65

99.28

Show/hide

Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        L+MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

A0A6J1GJA9 Histone H3

9.6e-66

99.28

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

A0A6J1K4K6 Histone H3

9.6e-66

99.28

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

A0A6J1KPT2 Histone H3

9.6e-66

99.28

Show/hide

Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

A0A6P6TAN2 Histone H3

5.6e-66

100

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

SwissProt top hits

e value

%identity

Alignment

P59169 Histone H3.3

1.7e-67

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

P69245 Histone H3.3

1.7e-67

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Q3C2E5 Histone H3.3

1.7e-67

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Q6RUR1 Histone H3.3

1.7e-67

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Q71V89 Histone H3.3

1.7e-67

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Arabidopsis top hits

e value

%identity

Alignment

AT4G40030.1 Histone superfamily protein

1.2e-68

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

AT4G40030.2 Histone superfamily protein

5.4e-69

98.55

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Query:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
        ++MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Subjt:  LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE

Query:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

AT4G40030.3 Histone superfamily protein

1.2e-68

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

AT4G40040.1 Histone superfamily protein

1.2e-68

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

AT4G40040.2 Histone superfamily protein

1.2e-68

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTGCAGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCTACTGGAGGGAAGGCTCCCAGGAAGCAACTGGCCACCAAGGCCGCCCGTAAGTCAGCCCCAACTACAGGAGG
GGTGAAGAAGCCTCACAGATACCGCCCTGGTACTGTTGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCTTGATTAGGAAGTTGCCATTCCAGAGGTTGG
TTCGTGAAATTGCCCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCACGCTGTTCTGGCTCTGCAAGAGGCAGCTGAGGCATACCTTGTTGGGTTGTTCGAGGACACC
AATCTGTGCGCCATCCACGCCAAGCGTGTTACCATAATGCCCAAAGATATCCAGTTGGCTAGGAGAATCAGGGGTGAACGTGCT

mRNA sequence

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Protein sequence

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LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDT
NLCAIHAKRVTIMPKDIQLARRIRGERA

MS012645 (gene) of Bitter gourd (TR) v1 genome