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MS012677 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012677
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationscaffold63:2554128..2554214
RNA-Seq ExpressionMS012677
SyntenyMS012677
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFO83482.1 RNA polymerase beta' subunit, partial [Lupinus sp. AT-2012]9.1e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
KAF1856155.1 hypothetical protein Lal_00044965 [Lupinus albus]9.1e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
YP_009093791.1 RNA polymerase beta' subunit [Luzuriaga radicans]2.4e-0593.1Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVERRAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
YP_009446162.1 RNA polymerase beta [Lupinus westianus]9.1e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
YP_010015604.1 RNA polymerase beta' subunit [Paphiopedilum emersonii]9.1e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
TrEMBL top hitse value%identityAlignment
A0A097F1B3 DNA-directed RNA polymerase subunit beta'1.2e-0593.1Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVERRAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
A0A140DN73 DNA-directed RNA polymerase (Fragment)4.4e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
A0A1C7D3R2 DNA-directed RNA polymerase subunit beta'4.4e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
A0A6A5L7A9 DNA-directed RNA polymerase subunit4.4e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
C7EC66 DNA-directed RNA polymerase (Fragment)4.4e-0589.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
SwissProt top hitse value%identityAlignment
A0ZZ26 DNA-directed RNA polymerase subunit beta'2.0e-0789.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
A6MM27 DNA-directed RNA polymerase subunit beta'2.0e-0789.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
A9L987 DNA-directed RNA polymerase subunit beta'2.0e-0789.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
Q2L8Z4 DNA-directed RNA polymerase subunit beta'2.0e-0789.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
Q4VZP2 DNA-directed RNA polymerase subunit beta'2.0e-0789.66Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQAFQPILVE RAICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA
Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein9.4e-0882.76Show/hide
Query:  RLYIQAFQPILVERRAICLHSLVCKGFNA
        RL IQ+FQPILVE R ICLH LVCKGFNA
Subjt:  RLYIQAFQPILVERRAICLHSLVCKGFNA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGATTGTATATCCAGGCCTTCCAACCTATTTTAGTGGAAAGACGTGCTATTTGTTTACATTCATTAGTCTGTAAGGGATTCAATGCA
mRNA sequenceShow/hide mRNA sequence
AGATTGTATATCCAGGCCTTCCAACCTATTTTAGTGGAAAGACGTGCTATTTGTTTACATTCATTAGTCTGTAAGGGATTCAATGCA
Protein sequenceShow/hide protein sequence
RLYIQAFQPILVERRAICLHSLVCKGFNA