CuGenDBv2

Gene ID	MS012697
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase III subunit RPC5
Genome location	scaffold63:2711149..2722040
RNA-Seq Expression	MS012697
Synteny	MS012697
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR006886 - DNA-directed RNA polymerase III subunit Rpc5

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022136590.1 DNA-directed RNA polymerase III subunit RPC5 [Momordica charantia]

0.0e+00

99.86

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMVDDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLT
        EAEEETMVDDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLT
Subjt:  EAEEETMVDDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLT

Query:  SSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLE
        SSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLE
Subjt:  SSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLE

Query:  SDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQ
        SDLSTRYQRSMVAQKSSPIQFSMSP DYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQ
Subjt:  SDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQ

Query:  GLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITN
        GLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITN
Subjt:  GLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITN

Query:  SFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA
        SFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA
Subjt:  SFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA

Query:  AAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSG
        AAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSG
Subjt:  AAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSG

Query:  DGNSR
        DGNSR
Subjt:  DGNSR

XP_022929283.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata]

0.0e+00

86.56

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTK EPE P SK  PE+ EPDA  GEKKEEGEEVEVKPKVE+SLPNGVDKMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV--DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQT
        E EEETMV  DDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYDSKA+ +LQMKKQT
Subjt:  EAEEETMV--DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQT

Query:  LTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG
        L SSWQPP+AT+YAVGLLMG+KLHLNP+H VVQLRPS EHLNSGGPKRK  VR DP+VK EE  DVNSA  SRKQKKQTG STE KTGD+E WIPLKYYG
Subjt:  LTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG

Query:  LESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQL
        LESDLSTR+ RSMVA+K+SP+QFSMSPHDY++SLCPGA +S  KP+GPSKR+LLSLSL+ERIKKLL+EGPP+QRFSALKHYAPDYE +EFIEALQQYAQ 
Subjt:  LESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQL

Query:  VQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGI
        VQGLWVAKSSFLLPQDG GRCARDFVL LFSKNP++SSSQINVPKSLRDK KHFLN F VERPAFKDW+F+EKTDR FLNNY+DIVQKQEK+WRSVEEGI
Subjt:  VQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGI

Query:  TNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA
        TNSFRGSVK+ SHANAA  KP++VPK EKQV  DKA+TKSS+A LNRKSTMSDETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARMA
Subjt:  TNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA

Query:  VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLK
        VAAAYGVDAPPDELK+II QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGRAINSNEY+KVMNEICVSHGS+W LK
Subjt:  VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLK

Query:  SGDGNSR
        SGDGNSR
Subjt:  SGDGNSR

XP_022985072.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima]

0.0e+00

86.72

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPK+EVVPKPEPQQPPTK EPE P   PEPE+ EPDA  GEKKEEGEEVEVKPKVE+SLPNGVDKMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV---DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQ
        E EEETMV   DDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYDSKA+ +LQMKKQ
Subjt:  EAEEETMV---DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQ

Query:  TLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYY
        TL SSWQPP+AT+YAVGLLMG+KLHLNP+H VVQLRPS EHLNSGGPKRK  VR DP+VK EE  DVNSA  SRKQKKQTG STE KTGD+ECWIPLKYY
Subjt:  TLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYY

Query:  GLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQ
        GLESDLSTR+ RSMVAQK+SP+QFSMSPHDY++SLCPGA +S  KP+GPSKR+LLSLSL+ERIKKLL+EGPP+QRFSALKHYAPDYE +EFIEALQQYAQ
Subjt:  GLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQ

Query:  LVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEG
         VQGLWVAKSSFLLPQDG GRCARDFVL LFSKNP++SSSQINVPKSLRDK KHFLN F VERPAFKDW+F+EKTDR FLNNY+DIVQKQEK+WRSVEEG
Subjt:  LVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEG

Query:  ITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARM
        ITNSFRGSVK+ SHANAA  KP++VPK EKQV  DKA+TKSS+A LNRKSTMSDETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARM
Subjt:  ITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARM

Query:  AVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVL
        AVAAAYGVDAPPDELK+II QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGRAINSNEY+KVMNEICVSHGSSW L
Subjt:  AVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVL

Query:  KSGDGNSR
        KSGDGNSR
Subjt:  KSGDGNSR

XP_023552355.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo]

0.0e+00

86.42

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQP TK EPEPP SK  PE+ EPDA  GEKKEEGEEVEVKPKVE+SLPNGVDKMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV--DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQT
        E EEETMV  DDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYDSKA+ +LQMKKQT
Subjt:  EAEEETMV--DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQT

Query:  LTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG
        L SSWQPP+AT+YAVGLLMG+KLHLNP+H VVQLRPS EHLNSGGPKRK  VR DP+VK EE  DVNSA  SRKQKKQTG STE KT D+ECWIPLKYYG
Subjt:  LTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG

Query:  LESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQL
        LESDLSTR+ RSMVAQK+SP+QFSMSPHDY++SLCPGA +S  KP+GPSKR+LLSLSL+ERIKKLL+EGPP++RFSALKHYAPDYE +EFIEALQQYAQ 
Subjt:  LESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQL

Query:  VQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGI
        VQGLWVAKSSFLLPQDG GRCARDFVL LFSKNP++SSSQINVPKSLRDK KHFLN F VERPAFKDW+F+EKTDR FLNNY+DIVQKQEK+WRSVEEGI
Subjt:  VQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGI

Query:  TNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA
        TNSFRGSVK+ SHANAA  KP++VPK EKQV  DKA+TKSS+A LNR+STMSDETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARMA
Subjt:  TNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA

Query:  VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLK
        VAAAYGVDAPPDELK+II QVATEIHGLYV+TSS EHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGRAINSNEY+KVMNEICVSHGSSW LK
Subjt:  VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLK

Query:  SGDGNSR
        SGDGNSR
Subjt:  SGDGNSR

XP_038876785.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]

0.0e+00

87.68

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDE SQV SRTSRFAPK SKFKPKPKSEVVPKPEPQQPPTK EP+PP SK  PE+ EPDA  GEKKEEGEEVE+KPKVE SLPNGV KMDVETKS
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV-DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTL
        E EEETMV DDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKPSSGEVEVDLNVDIESNNYDSKA+GSLQMKKQTL
Subjt:  EAEEETMV-DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGL
        TSSWQPPLAT+YAVGLLMGNKLHLNP+HAVVQLRPS EHLNSGGPKRKN VR DPDVK EE +DVNSA ASRKQKKQTG STELKTGD+ECWIPLKYYG 
Subjt:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGL

Query:  ESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLV
        ESDLSTR+ RSMVAQ ++P+QFSMSP DYM+SLCPG  TSS KP+GPSKRYLLSLSL+ERIKKLL+EGPPVQRFSALKHYAPDYEAEEFIEALQQYAQ V
Subjt:  ESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLV

Query:  QGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGIT
        QGLWV KSS LLPQD  GRCARDFVL LFSKNP++SSSQINVPKSLR+K KHFLNLF VERPAFKDWKF+EKTD  FL+NY+D+VQKQEKIWRSVEEGI+
Subjt:  QGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGIT

Query:  NSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV
          F GS KS SHANAATGKPD+V K EKQVS DKAT KSS+A LNRKSTMSDETREALPKALQKLF NHKVCSFQLICQGLRDLAVSQSTLPKADARMAV
Subjt:  NSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV

Query:  AAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKS
        AAAYGVDAPPDELKKII QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGR I SNEY+KVMNEICVSHGSSW LKS
Subjt:  AAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKS

Query:  GDGNSR
        GDGNSR
Subjt:  GDGNSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUN5 Uncharacterized protein

0.0e+00

84.56

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLD LDE SQVPSRTSRFAPK+SKFKPKPKSEVVPKPEPQQP TK EP+PP SK  PE+VEPDA   EKKE+GEEVEVKPKVESSLPNGV KMDVETKS
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV-DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTL
        E EE+ MV DDP+EED SEDMVVREIDVLFTPS D NSKLYVLQYPLRP WRPYEFEGRC+EVRVKPS+GEVEVDLNVDIESNNYD+KA+G+ QMKKQTL
Subjt:  EAEEETMV-DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGL
        TSSWQPPLAT+YAVGLLMGNKLHLNP+HAVVQLRPS EHLNSGGPKRKN VR D DVK EE +DVNSA ASRKQKKQTG STE+KT D+ECWIPLKYYGL
Subjt:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGL

Query:  ESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLV
        ESDLSTR+ +SMV+Q  SP+QFSMSPHDYM+SLCPG  TS  KP+GPSK+YLLSLSL+ERIKKLL+EGPPVQRFSALKHYAPDYE EEFIE LQQYAQLV
Subjt:  ESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLV

Query:  QGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGIT
        QGLWV KS FL+PQDG GRCARDFVL LFSKNP++SSSQINVPKSLRD+ KHFLNLF VERPAFKDWKF+EKTDR FL+N++ I +KQE++W +VE+G T
Subjt:  QGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGIT

Query:  NSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV
          F  S+KS  HANAATGKP +VPK EKQVS D+ TTKSS+APLNRK  MSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV
Subjt:  NSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV

Query:  AAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKS
        AAAYGVDAPPDELKKII QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASK ELGRAINSNEY+KVMNEIC+SHGSSW LKS
Subjt:  AAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKS

Query:  GDGNSR
        GDGNSR
Subjt:  GDGNSR

A0A1S3BX09 DNA-directed RNA polymerase III subunit RPC5 isoform X1

0.0e+00

85.27

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLD LDE SQVPSRTSRFAPK+SKFKPKPKSEVVPKPEPQQPPTK EP+PP SK  PE+VEPDA  GEKKE+GEEVEVKPKVESSLPNGV KMDVETKS
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV-DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTL
        E EE+TMV DDPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRP WRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYDSKA+ + QMKKQTL
Subjt:  EAEEETMV-DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGL
        TSSWQPPLAT+YAVGLLMGNKLHLNP+HAVVQLRPS EHLNSGGPKRKN +R D DVK EE +DVNSA ASRKQKKQTG STELKT D+ECWIPLKYYGL
Subjt:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGL

Query:  ESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLV
        ESDLSTR+ +SMV+Q  SP+QFSMSPHDYM+SLCPG  TSS KP+GPSK+YLLSLSL+ERIKKLL+EGPPVQRFSALKHYAPDYEAEEF+EALQQYAQLV
Subjt:  ESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLV

Query:  QGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGIT
        QGLWV KS FL+PQDG GRCARDFVL LFSKNP++SSSQINVPKSLRD+ KHFLNLF VERPAFKDWKF+EKTD SFL+N++ IVQKQE+ W ++E+ + 
Subjt:  QGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGIT

Query:  NSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV
          F  S+KSG H  A TGKPD+VPK EKQVS DK TTKSS+APLNRK  MSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV
Subjt:  NSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV

Query:  AAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKS
        AAAYGVDAPP+ELKKII QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGRAINSNEY+KVMNEICVSHGSSW LKS
Subjt:  AAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKS

Query:  GDGNSR
        GDGNSR
Subjt:  GDGNSR

A0A6J1C4C6 DNA-directed RNA polymerase III subunit RPC5

0.0e+00

99.86

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMVDDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLT
        EAEEETMVDDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLT
Subjt:  EAEEETMVDDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLT

Query:  SSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLE
        SSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLE
Subjt:  SSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLE

Query:  SDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQ
        SDLSTRYQRSMVAQKSSPIQFSMSP DYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQ
Subjt:  SDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQ

Query:  GLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITN
        GLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITN
Subjt:  GLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITN

Query:  SFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA
        SFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA
Subjt:  SFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA

Query:  AAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSG
        AAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSG
Subjt:  AAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSG

Query:  DGNSR
        DGNSR
Subjt:  DGNSR

A0A6J1EMD6 DNA-directed RNA polymerase III subunit RPC5 isoform X1

0.0e+00

86.56

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTK EPE P SK  PE+ EPDA  GEKKEEGEEVEVKPKVE+SLPNGVDKMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV--DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQT
        E EEETMV  DDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYDSKA+ +LQMKKQT
Subjt:  EAEEETMV--DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQT

Query:  LTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG
        L SSWQPP+AT+YAVGLLMG+KLHLNP+H VVQLRPS EHLNSGGPKRK  VR DP+VK EE  DVNSA  SRKQKKQTG STE KTGD+E WIPLKYYG
Subjt:  LTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG

Query:  LESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQL
        LESDLSTR+ RSMVA+K+SP+QFSMSPHDY++SLCPGA +S  KP+GPSKR+LLSLSL+ERIKKLL+EGPP+QRFSALKHYAPDYE +EFIEALQQYAQ 
Subjt:  LESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQL

Query:  VQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGI
        VQGLWVAKSSFLLPQDG GRCARDFVL LFSKNP++SSSQINVPKSLRDK KHFLN F VERPAFKDW+F+EKTDR FLNNY+DIVQKQEK+WRSVEEGI
Subjt:  VQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGI

Query:  TNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA
        TNSFRGSVK+ SHANAA  KP++VPK EKQV  DKA+TKSS+A LNRKSTMSDETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARMA
Subjt:  TNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA

Query:  VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLK
        VAAAYGVDAPPDELK+II QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGRAINSNEY+KVMNEICVSHGS+W LK
Subjt:  VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLK

Query:  SGDGNSR
        SGDGNSR
Subjt:  SGDGNSR

A0A6J1JCH8 DNA-directed RNA polymerase III subunit RPC5 isoform X1

0.0e+00

86.72

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS
        MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPK+EVVPKPEPQQPPTK EPE P   PEPE+ EPDA  GEKKEEGEEVEVKPKVE+SLPNGVDKMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKS

Query:  EAEEETMV---DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQ
        E EEETMV   DDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYDSKA+ +LQMKKQ
Subjt:  EAEEETMV---DDPMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQ

Query:  TLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYY
        TL SSWQPP+AT+YAVGLLMG+KLHLNP+H VVQLRPS EHLNSGGPKRK  VR DP+VK EE  DVNSA  SRKQKKQTG STE KTGD+ECWIPLKYY
Subjt:  TLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYY

Query:  GLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQ
        GLESDLSTR+ RSMVAQK+SP+QFSMSPHDY++SLCPGA +S  KP+GPSKR+LLSLSL+ERIKKLL+EGPP+QRFSALKHYAPDYE +EFIEALQQYAQ
Subjt:  GLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQ

Query:  LVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEG
         VQGLWVAKSSFLLPQDG GRCARDFVL LFSKNP++SSSQINVPKSLRDK KHFLN F VERPAFKDW+F+EKTDR FLNNY+DIVQKQEK+WRSVEEG
Subjt:  LVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEG

Query:  ITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARM
        ITNSFRGSVK+ SHANAA  KP++VPK EKQV  DKA+TKSS+A LNRKSTMSDETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARM
Subjt:  ITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARM

Query:  AVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVL
        AVAAAYGVDAPPDELK+II QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASKRELGRAINSNEY+KVMNEICVSHGSSW L
Subjt:  AVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVL

Query:  KSGDGNSR
        KSGDGNSR
Subjt:  KSGDGNSR

SwissProt top hits

e value

%identity

Alignment

O74883 DNA-directed RNA polymerase III subunit rpc5

5.7e-10

33.97

Show/hide

Query:  SEAEEETMVDDPMEEDVSE--DMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPY-EFEGRCE-EVRVKPSSGEVEVDLNVDIESNNYDSKA----EGS
        S +E++ M +  +  D +E  D VVR   V F+P   + + L + Q+PLRP  R Y +  G    +VRVKP +G +EVD+ +       + KA     G 
Subjt:  SEAEEETMVDDPMEEDVSE--DMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPY-EFEGRCE-EVRVKPSSGEVEVDLNVDIESNNYDSKA----EGS

Query:  LQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRK
          ++ QTL+   Q P  T   VGL+   + H+ P+  + QLRPS++H+N    K K
Subjt:  LQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRK

Q9CZT4 DNA-directed RNA polymerase III subunit RPC5

8.4e-30

25.87

Show/hide

Query:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DSKAEGSLQMKKQTL
        +D V++EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +D  + NY                  ++    S  M KQT 
Subjt:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DSKAEGSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRK-----NIVRGDPDVKPEESIDVNSAVASRKQKKQTG----SSTEL--KTGDD
         SS        YA  L    +LHL P+H ++QLRPS  +L+    K +     N        + EE +   +   SR + +Q       S E   K   +
Subjt:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRK-----NIVRGDPDVKPEESIDVNSAVASRKQKKQTG----SSTEL--KTGDD

Query:  ECWIPLKYYGLESDLSTRYQRSMVAQKSSPI---QFSMSPHDYMNSLCPGAC-TSSIKPRGPSK----RYLLSLSLDERIKKLLSEGPPVQRFSALKHYA
        E W+ L YYG+    S   ++ ++ Q SS +   +   SP +Y+  L P +      KP  PS       L +L L ++IK L+     +   + +    
Subjt:  ECWIPLKYYGLESDLSTRYQRSMVAQKSSPI---QFSMSPHDYMNSLCPGAC-TSSIKPRGPSK----RYLLSLSLDERIKKLLSEGPPVQRFSALKHYA

Query:  PDYEAEEFIEALQQYAQLVQGLWVAKSSFLLPQDGGG---------RC-ARDFVLCLFSKNPLISSSQI-NVPKSLRDKAKHFLNLFAVERPAFKDWKFR
        P  ++   +  +Q+ A LVQG WV KS  L P+D             C  RDFV+  F+++  +   ++  V K   +  K FL   AV R   K W+F 
Subjt:  PDYEAEEFIEALQQYAQLVQGLWVAKSSFLLPQDGGG---------RC-ARDFVLCLFSKNPLISSSQI-NVPKSLRDKAKHFLNLFAVERPAFKDWKFR

Query:  EKTDRSFLNNYLDIVQKQEKIWRSVEEGITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREA
           D  F+  + D+VQ+Q  +W  ++  +   +    ++          P  +   E++V   K   + + A L R+     E   A
Subjt:  EKTDRSFLNNYLDIVQKQEKIWRSVEEGITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREA

Q9NVU0 DNA-directed RNA polymerase III subunit RPC5

9.9e-31

Show/hide

Query:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DSKAEGSLQMKKQTL
        +D VV+EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +D  + NY                  ++    S  M KQT 
Subjt:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DSKAEGSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDP--DVKPEESIDVNSAVASR---------KQKKQTGSSTELKTGDD
         SS      + YA  L    +LHL P+H ++QLRPS  +L+    K +     +   D   +E+ D    +  R         +Q++        K   +
Subjt:  TSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDP--DVKPEESIDVNSAVASR---------KQKKQTGSSTELKTGDD

Query:  ECWIPLKYYGLESDLSTRYQRSMVAQKSSPI---QFSMSPHDYMNSLCPGAC-TSSIKPRGPSK----RYLLSLSLDERIKKLLSEGPPVQRFSALKHYA
        E W+ L YYGL    S   ++ ++   SS +   +   SP +Y+  L P +      KP  PS       L +L L ++IK L+     +   + +    
Subjt:  ECWIPLKYYGLESDLSTRYQRSMVAQKSSPI---QFSMSPHDYMNSLCPGAC-TSSIKPRGPSK----RYLLSLSLDERIKKLLSEGPPVQRFSALKHYA

Query:  PDYEAEEFIEALQQYAQLVQGLWVAKSSFLLPQDGGG---------RC-ARDFVLCLFSKNPLISSSQI-NVPKSLRDKAKHFLNLFAVERPAFKDWKFR
        P  ++   +  +Q+ A LVQG WV KS  L P+D             C  RDFV+  F+++  +   ++  V K   +  K FL   AV R   K W+F 
Subjt:  PDYEAEEFIEALQQYAQLVQGLWVAKSSFLLPQDGGG---------RC-ARDFVLCLFSKNPLISSSQI-NVPKSLRDKAKHFLNLFAVERPAFKDWKFR

Query:  EKTDRSFLNNYLDIVQKQEKIWRSVE
           D  F+  + D+VQ+Q  +W  ++
Subjt:  EKTDRSFLNNYLDIVQKQEKIWRSVE

Arabidopsis top hits

e value

%identity

Alignment

AT5G49530.1 SIN-like family protein

2.7e-148

43.79

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAP-KTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETK
        MD DD D+P +V ++T RFAP +  K KPKPK        P+    KP   PP S+ E        +  + + + +   V  KVE+ + NG  KM++++K
Subjt:  MDLDDLDEPSQVPSRTSRFAP-KTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETK

Query:  SEAEEETMVDDPMEED-------------VSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDS
         + E E M  + MEED               +D+VVREIDV F PS D N++LYVLQYPLRP WRPYE + RCEEVRV PS+ +VE+DL++D+ S NYDS
Subjt:  SEAEEETMVDDPMEED-------------VSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDS

Query:  KAEGSLQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTG
             L M KQTL ++W+ P    YAVG+L G+KLHLNP+HAV QLRPS++ L+S           D   K EES + +   + ++ K    +ST+ K  
Subjt:  KAEGSLQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTG

Query:  DDECWIPLKYYGLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAE
        ++E W+ LKY+GL+S+  +RY   M+A  +S I F+MSP  Y+N LC G  + + + +   KR LLSL L ER++KLL EG P+ R+S LKHYAP++  E
Subjt:  DDECWIPLKYYGLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAE

Query:  EFIEALQQYAQLVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVP-KSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQ
        +F+ ALQ+Y +LVQGLW  K+  LL  DG    ARD+VL LFS+N  I  S++      ++   +  L  FA ER   KDWKF+E TD SF+ +Y +IV+
Subjt:  EFIEALQQYAQLVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVP-KSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQ

Query:  KQEKIWRSVEEGITNSFR---GSVKSGSHANAATGKPDIVPKTEKQVSF-DKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLR
        +Q+  W    E + +      G  ++    N       +  K E   +  DK  +  ++        M +E ++ALPKAL+K+FQ HKVC ++ ICQGLR
Subjt:  KQEKIWRSVEEGITNSFR---GSVKSGSHANAATGKPDIVPKTEKQVSF-DKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLR

Query:  DLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYT
        DLAVS S  PKAD+ MAV  A  VDA   EL+ +I  VAT IHG YV  SSP+HPEYD LR+V+I LL G  P   L KA+V  A + +L R I +NEY 
Subjt:  DLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYT

Query:  KVMNEICVSHGSSWVLK
        KVM+EIC ++ S WVL+
Subjt:  KVMNEICVSHGSSWVLK

Sequences

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CDS sequence

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ATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTCGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAATCGGAAGTAGTTCCGAA
GCCGGAGCCCCAACAGCCGCCGACGAAACCGGAACCTGAACCTCCCGCTTCGAAGCCGGAACCAGAACTTGTGGAGCCGGATGCTGCAACTGGGGAGAAAAAGGAAGAAG
GAGAAGAAGTTGAAGTGAAACCAAAAGTTGAATCCTCGCTTCCTAATGGCGTTGATAAAATGGACGTTGAAACTAAGTCTGAAGCTGAAGAGGAGACAATGGTGGATGAT
CCGATGGAAGAAGATGTTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTCACTCCTTCAGCTGACATCAATTCGAAGTTGTATGTATTGCAATATCCGCTGAG
ACCATGCTGGAGGCCCTATGAATTTGAGGGGCGATGTGAGGAGGTGAGAGTTAAACCTAGCAGTGGAGAAGTGGAAGTTGATCTGAATGTTGATATTGAATCCAATAACT
ATGACAGTAAAGCTGAGGGCAGTTTGCAAATGAAGAAGCAGACTTTGACATCTTCGTGGCAACCACCTCTAGCAACTACCTATGCTGTTGGGCTGCTTATGGGTAATAAG
TTACACCTGAATCCCATACATGCAGTTGTGCAACTTCGACCATCAATTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATATTGTTAGAGGTGATCCAGATGTTAA
ACCAGAAGAGTCTATAGATGTTAACTCTGCAGTTGCATCAAGGAAGCAGAAAAAGCAAACTGGTTCTTCAACAGAGCTTAAAACTGGAGATGATGAGTGTTGGATTCCAC
TCAAGTACTATGGCCTAGAGAGTGATCTGTCAACCAGATATCAGCGAAGCATGGTGGCACAAAAAAGTTCCCCTATACAATTTTCAATGAGCCCGCATGACTATATGAAC
TCCTTGTGTCCTGGTGCGTGCACAAGCAGCATTAAGCCCAGGGGTCCATCTAAAAGGTATTTGCTTTCATTGTCTTTGGACGAACGGATTAAGAAATTGCTCAGCGAGGG
ACCTCCAGTTCAAAGATTCAGTGCACTTAAGCATTATGCCCCTGATTATGAAGCGGAAGAATTTATCGAAGCTCTTCAGCAGTATGCTCAGTTAGTGCAGGGTCTCTGGG
TTGCAAAAAGTTCATTTCTACTTCCCCAAGATGGTGGCGGACGTTGTGCTAGAGATTTTGTTCTTTGTCTGTTTAGCAAGAATCCTCTTATCAGCTCATCACAGATAAAT
GTTCCAAAGTCTCTTCGGGACAAAGCGAAACATTTTCTGAATTTGTTCGCTGTCGAAAGACCTGCCTTTAAGGACTGGAAATTTAGGGAGAAAACAGATCGTTCATTTTT
AAATAACTACCTGGATATTGTTCAGAAGCAAGAAAAGATATGGAGATCTGTAGAAGAAGGGATCACTAATTCCTTCCGGGGATCTGTCAAAAGTGGGTCCCATGCAAATG
CTGCTACAGGAAAGCCTGACATAGTTCCTAAAACTGAAAAACAAGTCAGTTTTGACAAAGCTACGACAAAAAGTAGTAGTGCACCTCTCAACCGAAAAAGTACCATGTCA
GATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTACGTGATTTGGCTGTGTCCCA
GTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCGGATGAATTAAAAAAAATCATAGGCCAAGTTGCAACTGAGATTC
ATGGTCTCTATGTCATGACGTCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTATAATTCAACTTTTGCGTGGACGTGGACCTAAAGCAGTGCTCAAAAAA
GCTGATGTGTTGGAAGCTTCCAAGCGTGAACTTGGGAGGGCTATCAATAGCAATGAATATACCAAGGTTATGAATGAAATTTGCGTGTCCCACGGTTCGTCTTGGGTCTT
GAAGAGTGGCGATGGAAATTCAAGA

mRNA sequence

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Protein sequence

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MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPELVEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKSEAEEETMVDD
PMEEDVSEDMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQTLTSSWQPPLATTYAVGLLMGNK
LHLNPIHAVVQLRPSIEHLNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYGLESDLSTRYQRSMVAQKSSPIQFSMSPHDYMN
SLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQIN
VPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMS
DETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKK
ADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSGDGNSR

MS012697 (gene) of Bitter gourd (TR) v1 genome