CuGenDBv2

Gene ID	MS012727
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit b, chloroplastic
Genome location	scaffold63:3006570..3006852
RNA-Seq Expression	MS012727
Synteny	MS012727
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR002146 - ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast

Homology

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GenBank top hits

e value

%identity

Alignment

ASY96331.1 ATP synthase CF0 B subunit [Cucumis melo subsp. agrestis]

1.0e-25

88.16

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

YP_004841769.1 ATP synthase CF0 subunit I [Cucumis melo subsp. melo]

1.0e-25

88.16

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

YP_009456047.1 ATP synthase CF0 B subunit [Momordica charantia]

9.5e-27

90.79

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKARSRLRKVEMEA+QF+VNGYSEIEREKFNLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

YP_009751471.1 CF0 subunit I [Thladiantha dubia]

1.0e-25

88.16

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

YP_009752906.1 CF0 subunit I [Momordica sessilifolia]

2.8e-26

89.47

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTI+N EEL EGAIEQLEKARSRLRKVEMEA+QF+VNGYSEIEREKFNLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

TrEMBL top hits

e value

%identity

Alignment

A0A249RXH2 ATP synthase subunit b, chloroplastic

5.1e-26

88.16

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

A0A249RZG2 ATP synthase subunit b, chloroplastic

5.1e-26

88.16

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

A0A286NFP9 ATP synthase subunit b, chloroplastic

5.1e-26

88.16

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

A0A2I6BZX1 ATP synthase subunit b, chloroplastic

4.6e-27

90.79

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL EGAIEQLEKARSRLRKVEMEA+QF+VNGYSEIEREKFNLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

A0A6H0EUI6 ATP synthase subunit b, chloroplastic

1.3e-26

89.47

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTI+N EEL EGAIEQLEKARSRLRKVEMEA+QF+VNGYSEIEREKFNLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

SwissProt top hits

e value

%identity

Alignment

B1A921 ATP synthase subunit b, chloroplastic

2.2e-26

81.58

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+L TI+N EEL +GAIEQLEKAR+RLRKVEMEA QF+VNGYSEIEREK+NLIN TSK+LEQLENYKNETI+F+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

Q09X31 ATP synthase subunit b, chloroplastic

1.3e-26

82.89

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTI+N EEL EGA+EQLEKARSRLRKVE EA+QF+VNGYSEIEREK NLIN TSK+LEQLENYKNETI F+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

Q4VZP7 ATP synthase subunit b, chloroplastic

8.9e-28

86.84

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+LKTIQN EEL  GAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK NLIN TSKSLEQLENYKNETIRF+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

Q68S20 ATP synthase subunit b, chloroplastic

6.4e-26

80.26

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+L TI+N EEL EGAIEQLEKAR+RLRKVEMEA+QF+VNGYSEIEREK+N IN TSK+L+QLENYKNETI F+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

Q8S8Y2 ATP synthase subunit b, chloroplastic

1.4e-25

81.58

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+L TI+N EEL EGAIEQLEKARSRLRKVE EA QF+VNGYSEIEREK NLIN T K+LEQLENYKNETI+F+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00130.1 ATPase, F0 complex, subunit B/B', bacterial/chloroplast

1.0e-23

73.68

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Query:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ
        R+L TI+N EEL EGAI+QLE AR+RLR VE EA++F+VNGYSEIEREK NLIN T K+L+QLENYKNETI F+QQ
Subjt:  RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQ

Sequences

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CDS sequence

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AGGGTATTGAAAACAATTCAAAATTTAGAAGAACTCCACGAGGGGGCAATTGAACAGCTAGAAAAAGCTCGGTCCCGCTTACGGAAAGTTGAAATGGAAGCGAATCAGTT
TCAAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTTAATTTGATTAATTTAACTTCTAAAAGTTTGGAACAATTAGAAAATTATAAAAATGAAACTATTCGTTTTA
AACAACAGATAGTGTTAATCAAGTACGACAACATATTTTCCAACAAGCCTTACAGGGAACTC

mRNA sequence

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Protein sequence

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RVLKTIQNLEELHEGAIEQLEKARSRLRKVEMEANQFQVNGYSEIEREKFNLINLTSKSLEQLENYKNETIRFKQQIVLIKYDNIFSNKPYREL

MS012727 (gene) of Bitter gourd (TR) v1 genome