CuGenDBv2

Gene ID	MS012729
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	scaffold63:3007491..3007646
RNA-Seq Expression	MS012729
Synteny	MS012729
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0051693 - actin filament capping (biological process) GO:0051017 - actin filament bundle assembly (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009521 - photosystem (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function) GO:0051015 - actin filament binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0043531 - ADP binding (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

AHM91161.1 ATP synthase CF1 alpha subunit, partial [Lagenaria siceraria]

1.8e-19

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

ALI89188.1 AtpA, partial [Platea latifolia]

1.8e-19

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

QXJ41274.1 ATP synthase CF1 alpha subunit [Dysosma versipellis]

1.8e-19

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

YP_009560820.1 AtpA [Trichosanthes kirilowii]

1.8e-19

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

YP_009860240.1 ATP synthase CF1 alpha subunit [Osyris wightiana]

1.8e-19

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

TrEMBL top hits

e value

%identity

Alignment

A0A0F6Q0Q4 ATP synthase subunit alpha, chloroplastic

8.7e-20

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

A0A3P8MVN5 ATP synthase subunit alpha, chloroplastic

8.7e-20

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

A0A3Q9VGG1 ATP synthase subunit alpha, chloroplastic

8.7e-20

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

A0A3T0U533 ATP synthase subunit alpha, chloroplastic

8.7e-20

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

W8GVX3 ATP synthase subunit alpha

8.7e-20

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

SwissProt top hits

e value

%identity

Alignment

A0A320 ATP synthase subunit alpha, chloroplastic

6.9e-22

94.23

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        +HTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

A6MM21 ATP synthase subunit alpha, chloroplastic

6.9e-22

94.23

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        +HTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

Q09FX6 ATP synthase subunit alpha, chloroplastic

6.9e-22

94.23

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        +HTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

Q09X32 ATP synthase subunit alpha, chloroplastic

2.4e-22

96.15

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

Q0G9N4 ATP synthase subunit alpha, chloroplastic

6.9e-22

94.23

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        +HTSIIYDDPSKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAKSS
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

Arabidopsis top hits

e value

%identity

Alignment

AT2G07698.1 ATPase, F1 complex, alpha subunit protein

9.5e-19

84.31

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Query:  HTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        H  IIYDD SKQ  AYRQMSLLLRRPPG EA+PGDVFYLHSRLLERAAK S
Subjt:  HTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

ATCG00120.1 ATP synthase subunit alpha

6.0e-21

90.38

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Query:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        QHT IIYDD SKQ QAYRQMSLLLRRPPG EAYPGDVFYLHSRLLERAAK S
Subjt:  QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

ATMG01190.1 ATP synthase subunit 1

9.5e-19

84.31

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Query:  HTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS
        H  IIYDD SKQ  AYRQMSLLLRRPPG EA+PGDVFYLHSRLLERAAK S
Subjt:  HTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

Sequences

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CDS sequence

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CAACACACTTCAATCATTTATGATGATCCCTCCAAACAAGGACAAGCTTATCGACAAATGTCTCTTCTTTTACGAAGACCACCGGGCTGTGAAGCTTATCCAGGGGATGT
TTTTTATTTGCATTCACGCCTTTTGGAAAGAGCTGCTAAATCAAGT

mRNA sequence

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CAACACACTTCAATCATTTATGATGATCCCTCCAAACAAGGACAAGCTTATCGACAAATGTCTCTTCTTTTACGAAGACCACCGGGCTGTGAAGCTTATCCAGGGGATGT
TTTTTATTTGCATTCACGCCTTTTGGAAAGAGCTGCTAAATCAAGT

Protein sequence

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QHTSIIYDDPSKQGQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSS

MS012729 (gene) of Bitter gourd (TR) v1 genome