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MS012761 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012761
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SPIRAL1-like 5
Genome locationscaffold63:3215173..3215697
RNA-Seq ExpressionMS012761
SyntenyMS012761
Gene Ontology termsGO:0043622 - cortical microtubule organization (biological process)
GO:0010005 - cortical microtubule, transverse to long axis (cellular component)
InterPro domainsIPR039613 - Protein SPIRAL1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146520.1 protein SPIRAL1-like 5 [Cucumis sativus]6.9e-4490Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGD
        MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++PDD +NNPSPSPKQLVS NNYPRAHGQNSGNF+TDRPSTKVKSAPGGDSSLGYLFGD
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGD

XP_008452039.1 PREDICTED: protein SPIRAL1-like 5 [Cucumis melo]7.7e-4389.22Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISP-DDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG
        MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++P DD  NNPSPSPKQLVS NNYPRAHGQNSGNF+TDRPSTKVKSAPGGDSSLGYLFG
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISP-DDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG

Query:  DK
        DK
Subjt:  DK

XP_022136791.1 protein SPIRAL1-like 5 [Momordica charantia]1.2e-4899Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK
        MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPG DSSLGYLFGDK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK

XP_022941576.1 protein SPIRAL1-like 5 [Cucurbita moschata]5.3e-4490Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK
        MSRGGSYGGGRSSLGYLFGNDD+P KPQVS+V+LPPPYGIDI+PDDQ NNPSPSPKQ  SNNYPRAHGQNSGNF+TDRPSTKVKS PGGDSSLGYLFGDK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK

XP_038883008.1 protein SPIRAL1-like 5 [Benincasa hispida]1.8e-4490.1Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDD-QSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGD
        MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++PDD  +NNPSPSPKQLVSNNYPRAHGQNSGNF+TDRPSTKVKSAPGGDSSLGYLFGD
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDD-QSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGD

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0KUV0 Uncharacterized protein3.4e-4490Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGD
        MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++PDD +NNPSPSPKQLVS NNYPRAHGQNSGNF+TDRPSTKVKSAPGGDSSLGYLFGD
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGD

A0A5D3CZ49 Protein SPIRAL1-like 53.7e-4389.22Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISP-DDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG
        MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++P DD  NNPSPSPKQLVS NNYPRAHGQNSGNF+TDRPSTKVKSAPGGDSSLGYLFG
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISP-DDQSNNPSPSPKQLVS-NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG

Query:  DK
        DK
Subjt:  DK

A0A6J1C4I1 protein SPIRAL1-like 55.9e-4999Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK
        MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPG DSSLGYLFGDK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK

A0A6J1FLH4 protein SPIRAL1-like 52.6e-4490Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK
        MSRGGSYGGGRSSLGYLFGNDD+P KPQVS+V+LPPPYGIDI+PDDQ NNPSPSPKQ  SNNYPRAHGQNSGNF+TDRPSTKVKS PGGDSSLGYLFGDK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK

A0A6J1J7K0 protein SPIRAL1-like 52.6e-4490Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK
        MSRGGSYGGGRSSLGYLFGNDD+P KPQVS+V+LPPPYGIDI+PDDQ NNPSPSPKQ  SNNYPRAHGQNSGNF+TDRPSTKVKS PGGDSSLGYLFGDK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK

SwissProt top hitse value%identityAlignment
B3H4F1 Protein SPIRAL1-like 11.2e-1749.14Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLV------------------SNNYPRAHGQNSGNFLTDRPSTK
        M RG S GGG+SSLGYLFG+ + P KP ++    P    + IS D       PSPK +                   +NNY RA GQN+GNFLTDRPSTK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLV------------------SNNYPRAHGQNSGNFLTDRPSTK

Query:  VKSAPGGDSSLGYLFG
        V +APGG SSL YLFG
Subjt:  VKSAPGGDSSLGYLFG

Q2QQ99 Protein SPIRAL1-like 31.4e-1550Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS---NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLF
        M RG S GGG+SSLGYLFG  + P   +    +  P      +P   +      P  + S   NNY RA GQN GNFLTDRPSTKV++APGG SSL YLF
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS---NNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLF

Q7Y1L9 Protein SPIRAL1-like 15.2e-1851.75Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQP---TKPQVSRVILPPPYGIDISP-DDQSNNPSP----SPKQL--------VSNNYPRAHGQNSGNFLTDRPSTKVK
        MSRGGS GGG+SSLGYLFG ++ P    KP  +    P P     +     +  PSP    + KQ+         +NNY RA GQN+GNFLTDRPSTKV 
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQP---TKPQVSRVILPPPYGIDISP-DDQSNNPSP----SPKQL--------VSNNYPRAHGQNSGNFLTDRPSTKVK

Query:  SAPGGDSSLGYLFG
        +APGG SSLGYLFG
Subjt:  SAPGGDSSLGYLFG

Q8LGD1 Protein SPIRAL1-like 55.7e-2559.8Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQ-PTKPQVSRVILP-PPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG
        MSRGGS+GGG+SSLGYLFG+D++ P  P       P PPYG+D + +D   +  P   ++ +NNY R  GQNSGNF+TDRP+TKVKS PGG SSLGYLFG
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQ-PTKPQVSRVILP-PPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG

Query:  DK
        DK
Subjt:  DK

Q9LE54 Protein SPIRAL1-like 26.4e-1649.06Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQV--------SRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSS
        M RG S GGG+SSLGYLFG+ + P    V        S    PP      +  D             +NNY RA GQN+GNF+TDRPSTKV SAPGG SS
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQV--------SRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSS

Query:  LGYLFG
        L YLFG
Subjt:  LGYLFG

Arabidopsis top hitse value%identityAlignment
AT1G26355.1 SPIRAL1-like18.2e-1949.14Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLV------------------SNNYPRAHGQNSGNFLTDRPSTK
        M RG S GGG+SSLGYLFG+ + P KP ++    P    + IS D       PSPK +                   +NNY RA GQN+GNFLTDRPSTK
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLV------------------SNNYPRAHGQNSGNFLTDRPSTK

Query:  VKSAPGGDSSLGYLFG
        V +APGG SSL YLFG
Subjt:  VKSAPGGDSSLGYLFG

AT1G69230.1 SPIRAL1-like24.5e-1749.06Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQV--------SRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSS
        M RG S GGG+SSLGYLFG+ + P    V        S    PP      +  D             +NNY RA GQN+GNF+TDRPSTKV SAPGG SS
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQV--------SRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSS

Query:  LGYLFG
        L YLFG
Subjt:  LGYLFG

AT1G69230.2 SPIRAL1-like24.5e-1749.06Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQV--------SRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSS
        M RG S GGG+SSLGYLFG+ + P    V        S    PP      +  D             +NNY RA GQN+GNF+TDRPSTKV SAPGG SS
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQV--------SRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSS

Query:  LGYLFG
        L YLFG
Subjt:  LGYLFG

AT2G03680.1 spiral11.1e-1545.16Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSP-----------------SPKQLVS----------NNYPRAHGQNSGN
        M RG S GGG+SSL YLFG D    KP    V  P P     +P + +N P+P                  P +L            NNY RA GQN+GN
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSP-----------------SPKQLVS----------NNYPRAHGQNSGN

Query:  FLTDRPSTKVKSAPGGDSSLGYLF
        FLTDRPSTKV +APGG SSL YLF
Subjt:  FLTDRPSTKVKSAPGGDSSLGYLF

AT4G23496.1 SPIRAL1-like54.1e-2659.8Show/hide
Query:  MSRGGSYGGGRSSLGYLFGNDDQ-PTKPQVSRVILP-PPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG
        MSRGGS+GGG+SSLGYLFG+D++ P  P       P PPYG+D + +D   +  P   ++ +NNY R  GQNSGNF+TDRP+TKVKS PGG SSLGYLFG
Subjt:  MSRGGSYGGGRSSLGYLFGNDDQ-PTKPQVSRVILP-PPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFG

Query:  DK
        DK
Subjt:  DK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGAGGTGGAAGCTATGGCGGTGGAAGAAGCTCCTTAGGCTATCTGTTTGGAAACGATGATCAGCCCACAAAGCCTCAGGTTTCTCGAGTGATTCTTCCTCCTCC
TTATGGAATTGATATTAGCCCTGATGATCAAAGTAATAATCCTTCTCCCTCTCCAAAACAACTCGTCTCCAACAATTACCCTCGCGCTCACGGCCAAAACTCCGGAAACT
TCTTAACGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGTGATTCATCGCTAGGGTACCTGTTTGGAGATAAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGAGGTGGAAGCTATGGCGGTGGAAGAAGCTCCTTAGGCTATCTGTTTGGAAACGATGATCAGCCCACAAAGCCTCAGGTTTCTCGAGTGATTCTTCCTCCTCC
TTATGGAATTGATATTAGCCCTGATGATCAAAGTAATAATCCTTCTCCCTCTCCAAAACAACTCGTCTCCAACAATTACCCTCGCGCTCACGGCCAAAACTCCGGAAACT
TCTTAACGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGTGATTCATCGCTAGGGTACCTGTTTGGAGATAAG
Protein sequenceShow/hide protein sequence
MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVSNNYPRAHGQNSGNFLTDRPSTKVKSAPGGDSSLGYLFGDK