CuGenDBv2

Gene ID	MS012770
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome location	scaffold63:3314797..3317652
RNA-Seq Expression	MS012770
Synteny	MS012770
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019314 - BLOC-1-related complex subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022136587.1 uncharacterized protein LOC111008257 isoform X1 [Momordica charantia]

5.5e-64

100

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Query:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
        MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
Subjt:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

XP_022136588.1 uncharacterized protein LOC111008257 isoform X2 [Momordica charantia]

6.2e-76

100

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Query:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
        MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
Subjt:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
        ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

XP_022136589.1 uncharacterized protein LOC111008257 isoform X3 [Momordica charantia]

9.4e-56

100

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Query:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
        MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
Subjt:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ

Query:  ESVLDAATKGNRYINSSLR
        ESVLDAATKGNRYINSSLR
Subjt:  ESVLDAATKGNRYINSSLR

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]

1.2e-55

77.07

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Query:  MDQARADFSTKIDS--QIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC
        M+Q+ +D S+ I++  QIP TSPNS + E PTCSVLED T+ +  L  TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSE + NSIDHMHCF+DAAG 
Subjt:  MDQARADFSTKIDS--QIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLK+LRKNVD LD AVNKLL+FP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]

7.2e-56

77.71

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Query:  MDQARADFSTKID--SQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC
        M+Q+ +D ST I+   QIP TSPNS + E PTCSVLED T+ +  L  TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSE + NSIDHMHCF+DAAG 
Subjt:  MDQARADFSTKID--SQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLK+LRKNVD LD AVNKLL+FP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C4R3 uncharacterized protein LOC111008257 isoform X3

4.5e-56

100

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Query:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
        MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
Subjt:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ

Query:  ESVLDAATKGNRYINSSLR
        ESVLDAATKGNRYINSSLR
Subjt:  ESVLDAATKGNRYINSSLR

A0A6J1C5W4 uncharacterized protein LOC111008257 isoform X1

2.7e-64

100

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Query:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
        MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
Subjt:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X2

3.0e-76

100

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Query:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
        MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ
Subjt:  MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
        ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

A0A6J1EUG1 uncharacterized protein LOC111437668

5.9e-56

77.07

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Query:  MDQARADFSTKIDS--QIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC
        M+Q+ +D S+ I++  QIP TSPNS + E PTCSVLED T+ +  L  TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSE + NSIDHMHCF+DAAG 
Subjt:  MDQARADFSTKIDS--QIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLK+LRKNVD LD AVNKLL+FP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

A0A6J1J2E9 uncharacterized protein LOC111482798

1.0e-55

77.07

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Query:  MDQARADFSTKID--SQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC
        M+Q+ +D S+ I+  SQIP TSPNS + E PTCSVLED T+ +  L  TEIFKAI+VVEK+SLAIAESFTSLFASLRS LSE + NSIDHMHCF+DAAG 
Subjt:  MDQARADFSTKID--SQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGC

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLK+LRKNVD LD AVNKLL+FP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)

1.7e-23

69.88

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Query:  KSKP-PLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQESVLDAATKGNRYINSSLRL
        +S+P  L Q EI K +  VEKDS AIAESF+SLF SLRS LSEA+G+S+DHM CF +AAG LQE+ LDAATKGNRYINS LRL
Subjt:  KSKP-PLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQESVLDAATKGNRYINSSLRL

AT4G23330.2 unknown protein

9.4e-38

70.34

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Query:  KSKP-PLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVL
        +S+P  L Q EI K +  VEKDS AIAESF+SLF SLRS LSEA+G+S+DHM CF +AAG LQE+ LDAATKGNRYINS LRLN+E+KG++NLAA+LK L
Subjt:  KSKP-PLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLKVL

Query:  RKNVDALDSAVNKLLDFP
        RKNVD LD+AVNKLL  P
Subjt:  RKNVDALDSAVNKLLDFP

Sequences

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CDS sequence

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ATGGACCAAGCTCGGGCGGATTTTTCCACAAAGATAGACAGTCAGATTCCGGGGACATCCCCAAATTCAACTGTTTCCGAGATGCCCACTTGTTCCGTTCTTGAAGATTC
CACCAAATCGAAACCTCCGTTGAGACAGACCGAGATTTTCAAAGCCATTGAAGTCGTCGAGAAAGACTCTCTCGCCATAGCTGAGAGCTTCACCTCTCTCTTTGCTTCCC
TCCGTTCGGCTCTCTCCGAGGCCTCCGGCAACTCTATTGATCATATGCATTGCTTCAGTGACGCTGCAGGCTGCCTTCAAGAATCTGTGCTTGATGCGGCAACAAAGGGT
AATCGGTACATTAATTCTTCATTGAGATTGAATCAGGAAATGAAAGGCATTGACAATCTAGCTGCTCAGCTCAAAGTTCTGAGGAAGAACGTTGACGCTCTAGACTCGGC
CGTGAACAAGCTCCTTGATTTTCCA

mRNA sequence

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Protein sequence

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MDQARADFSTKIDSQIPGTSPNSTVSEMPTCSVLEDSTKSKPPLRQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEASGNSIDHMHCFSDAAGCLQESVLDAATKG
NRYINSSLRLNQEMKGIDNLAAQLKVLRKNVDALDSAVNKLLDFP

MS012770 (gene) of Bitter gourd (TR) v1 genome