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MS012776 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012776
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationscaffold63:3352407..3352748
RNA-Seq ExpressionMS012776
SyntenyMS012776
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]5.8e-4780.33Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-

Query:  -------SAGEIADETTVSMPM
               +A E+ +  T+S+P+
Subjt:  -------SAGEIADETTVSMPM

XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]7.6e-4782.91Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES
        MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIF+E+
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES

Query:  A-----GEIADETTVSM
        A     G++ +  T+S+
Subjt:  A-----GEIADETTVSM

XP_022136847.1 nuclear transcription factor Y subunit C-1-like [Momordica charantia]4.0e-56100Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES
        MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES

Query:  AGEIADETTVSMPM
        AGEIADETTVSMPM
Subjt:  AGEIADETTVSMPM

XP_022931515.1 nuclear transcription factor Y subunit C-4-like [Cucurbita moschata]5.8e-4780.33Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-

Query:  -------SAGEIADETTVSMPM
               +A E+ +  T+S+P+
Subjt:  -------SAGEIADETTVSMPM

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]4.1e-4882.64Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-

Query:  ------SAGEIADETTVSMPM
              +AG++A+  T+S+P+
Subjt:  ------SAGEIADETTVSMPM

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein3.7e-4782.91Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES
        MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIF+E+
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES

Query:  A-----GEIADETTVSM
        A     G++ +  T+S+
Subjt:  A-----GEIADETTVSM

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like6.3e-4783.48Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-
        MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIF+E 
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-

Query:  --SAGEIADETTVSM
          +AG++ +   +S+
Subjt:  --SAGEIADETTVSM

A0A6J1C6K6 nuclear transcription factor Y subunit C-1-like2.0e-56100Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES
        MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHES

Query:  AGEIADETTVSMPM
        AGEIADETTVSMPM
Subjt:  AGEIADETTVSMPM

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like2.8e-4780.33Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-

Query:  -------SAGEIADETTVSMPM
               +A E+ +  T+S+P+
Subjt:  -------SAGEIADETTVSMPM

A0A6J1J883 nuclear transcription factor Y subunit C-4-like4.8e-4779.03Show/hide
Query:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELT+RSWM+AM SKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE-

Query:  ---------SAGEIADETTVSMPM
                 +AG++ +  T+S+P+
Subjt:  ---------SAGEIADETTVSMPM

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-25.2e-2261.63Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGE
        H LPLARIKKIM K+ EDV+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TD+FDFL+ ++  E A E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGE

Q655V5 Nuclear transcription factor Y subunit C-42.0e-2162.03Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLI
        HSLPLARIKKIM K+ EDV+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLI

Q8L4B2 Nuclear transcription factor Y subunit C-98.8e-2255.21Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTVSMP
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E   ++ DE   S+P
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTVSMP

Q9FMV5 Nuclear transcription factor Y subunit C-44.0e-2260.67Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIAD
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E   E  D
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIAD

Q9SMP0 Nuclear transcription factor Y subunit C-12.3e-2260.22Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTV
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  +   EI DE  V
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTV

Arabidopsis top hitse value%identityAlignment
AT1G08970.1 nuclear factor Y, subunit C96.3e-2355.21Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTVSMP
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E   ++ DE   S+P
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTVSMP

AT1G08970.4 nuclear factor Y, subunit C96.3e-2355.21Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTVSMP
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E   ++ DE   S+P
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTVSMP

AT3G48590.1 nuclear factor Y, subunit C11.7e-2360.22Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTV
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  +   EI DE  V
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTV

AT5G63470.1 nuclear factor Y, subunit C42.8e-2360.67Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIAD
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E   E  D
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIAD

AT5G63470.2 nuclear factor Y, subunit C42.8e-2360.67Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIAD
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E   E  D
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCGGGAGCGTATTCCGGCGTGTTGTACTGGAAAACAGGGCCGCACTCGCTGCCGCTGGCGAGAATCAAGAAGATCATGAAGAAGTCCGGCGAGGACGTGAA
GATGATTTCCGGCGAGGCTCCGATCGTGTTCTCCAAGGCGTGCGAGCTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGGTCGCGATGCAGAGCAAGAAGAGGATGC
TCCACAAAGAGGACGTCGCCTCCGCGATCTTGGCCACCGATCTTTTCGATTTTCTGATCGGTTTGATTTTCCACGAATCCGCCGGCGAGATTGCCGATGAAACAACTGTA
TCCATGCCAATG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCGGGAGCGTATTCCGGCGTGTTGTACTGGAAAACAGGGCCGCACTCGCTGCCGCTGGCGAGAATCAAGAAGATCATGAAGAAGTCCGGCGAGGACGTGAA
GATGATTTCCGGCGAGGCTCCGATCGTGTTCTCCAAGGCGTGCGAGCTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGGTCGCGATGCAGAGCAAGAAGAGGATGC
TCCACAAAGAGGACGTCGCCTCCGCGATCTTGGCCACCGATCTTTTCGATTTTCTGATCGGTTTGATTTTCCACGAATCCGCCGGCGAGATTGCCGATGAAACAACTGTA
TCCATGCCAATG
Protein sequenceShow/hide protein sequence
MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHESAGEIADETTV
SMPM