CuGenDBv2

Gene ID	MS012779
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	scaffold63:3369850..3373700
RNA-Seq Expression	MS012779
Synteny	MS012779
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

2.1e-135

92.78

Show/hide

Query:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC
        MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEAC
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+Y +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

1.9e-136

92.78

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Query:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC
        MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEAC
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYL+RKFPEGIAVIDLKD+Y +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022136771.1 general transcription factor IIE subunit 2-like [Momordica charantia]

1.9e-147

99.64

Show/hide

Query:  MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV
        MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV

Query:  DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD
        DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSY TVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD
Subjt:  DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD

Query:  DDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        DDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  DDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

2.8e-135

92.75

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Query:  MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACY
        MALQ+KLDRFK+QQERCQTTL+GIAASK +++TP+FTPAPAA   RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACY
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACY

Query:  VDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV
        VDINSNKAVFDSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSY +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV
Subjt:  VDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV

Query:  DDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        DDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  DDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

3.6e-135

93.14

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Query:  MALQDKLDRFKKQQERCQTTLTGIAASKSS--STPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC
        MALQ++LDRFKKQQERCQTTL+GIAA+KS+  STPKFTPAPAA   RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEAC
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASKSS--STPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVFDSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+Y +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPK KKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

9.3e-137

92.78

Show/hide

Query:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC
        MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEAC
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYL+RKFPEGIAVIDLKD+Y +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

1.0e-135

92.78

Show/hide

Query:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC
        MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEAC
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+Y +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

1.0e-135

92.78

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Query:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC
        MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEAC
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+Y +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1C4F9 Transcription initiation factor IIE subunit beta

9.0e-148

99.64

Show/hide

Query:  MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV
        MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV

Query:  DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD
        DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSY TVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD
Subjt:  DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD

Query:  DDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        DDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  DDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

1.3e-135

92.75

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Query:  MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACY
        MALQ+KLDRFK+QQERCQTTL+GIAASK +++TP+FTPAPAA   RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACY
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACY

Query:  VDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV
        VDINSNKAVFDSLRNNPKVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSY +VMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV
Subjt:  VDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV

Query:  DDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        DDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  DDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

SwissProt top hits

e value

%identity

Alignment

P29084 Transcription initiation factor IIE subunit beta

5.1e-07

26.46

Show/hide

Query:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI
        E ++E  ++DI   +    + ++L NNPK+     ++A+K K++++DK  LL L+ +  + G+  I L+D    +    +A+KA G   L  N   ++ I
Subjt:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI

Query:  AYPNDPRIQIKVDDDLKILFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
         + ND   Q  VD++ + L+R + +   D   +E+ L++ G+     +  ++  A      KP  +KK     +R K  N HL  + K+
Subjt:  AYPNDPRIQIKVDDDLKILFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

P29540 General transcription factor IIE subunit 2

1.9e-06

27.08

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Query:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI
        E ++E  ++DI   +    + ++L NNPK+     ++A+K K++LKDK  LL L+ K  + G+  I L+D    +    +A+KA G   +      ++ I
Subjt:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI

Query:  AYPNDPRIQIKVDDDLKILFREIELPRDMLD---VEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRT-KLTNAHLPELFKN
         + ND   Q  VD++ + L+R +  P D +D   +E+ L++ G+     +  ++          P  K+KK    +R  K  N HL  + K+
Subjt:  AYPNDPRIQIKVDDDLKILFREIELPRDMLD---VEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRT-KLTNAHLPELFKN

P79011 Transcription initiation factor IIE subunit beta

9.9e-11

28.78

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Query:  AQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRR--FAYKSKHDLKDKSQLLYLI--RKFPEGIAVIDLKDSYTTVMEDLQA
        +Q+   ++ L E     T E+I  A Y+       + + L+ N +++YD R   F +K  H+++  + LL  +  +K   G+++ +L+D +  V  +L+ 
Subjt:  AQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRR--FAYKSKHDLKDKSQLLYLI--RKFPEGIAVIDLKDSYTTVMEDLQA

Query:  LKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKL
        L+  G+V LL +  D    + + ND      VD + + ++ EI +P   LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+
Subjt:  LKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKL

Query:  TNAHL
        TN HL
Subjt:  TNAHL

Q2KJF9 General transcription factor IIE subunit 2

1.3e-07

27.51

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Query:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI
        E ++E  ++DI   +    + ++L NNPK+     ++A+K K++LKDK  LL L+ +  + G+  I L+D    +    +A+KA G   L  N   ++ I
Subjt:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI

Query:  AYPNDPRIQIKVDDDLKILFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
         + ND   Q  VD++ + L+R + +   D   +E+ L++ G+    ++  ++  A      KP  +KK     +R K  N HL  + K+
Subjt:  AYPNDPRIQIKVDDDLKILFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Q9D902 General transcription factor IIE subunit 2

6.7e-07

26.98

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Query:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI
        E ++E  ++DI   +    + ++L NNPK+     ++A+K K++LKDK  LL L+    + G+  I L+D    +    +A+KA G   L  +   ++ I
Subjt:  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE-GIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDI

Query:  AYPNDPRIQIKVDDDLKILFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
         + ND   Q  VD++ + L+R + +   D   +E+ L++ G+     ++ + +  + VAS + + K   Q+  +R K  N HL  + K+
Subjt:  AYPNDPRIQIKVDDDLKILFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

2.1e-96

68.21

Show/hide

Query:  MALQDKLDRFKKQQERCQTTLTGIAAS--KSSSTPKFTPAPAA-PNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEA
        MAL+++LD+F KQQ +CQ+TL+ IA+S  ++SS+ +  P PAA    +P A  VKFS+DTERLQ+IN+IRK+PVGAQIKRVIDLL E RLA TPEQINE 
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAAS--KSSSTPKFTPAPAA-PNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEA

Query:  CYVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI
        C+VD+++NKAVFDSLR NPK HYDGRRF+YK+ HD+ DK+QLL L+RK+ +GIAV+DLKD+Y  VMEDL+AL ASG ++LLSN  SQEDIAYPND + +I
Subjt:  CYVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        KVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+RRA AQ H  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Subjt:  KVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

6.7e-79

58.27

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Query:  MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV
        MAL+++LD+F KQQE+CQ+TL+ I++S+++ +  + PA A  + +P     KFS +T++LQHI +IR S VGAQ+K VIDLL +TRLA+T EQINEACYV
Subjt:  MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYV

Query:  DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQIKV
        D+++NKAVFDSLR NPKVHYDGRRF+YK+ H++KDK QLL  + K  + I V DLKD+Y  VMEDL++LK+SG++ WLLSN DS+E   Y N+     K+
Subjt:  DINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQIKV

Query:  DDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA  Q H  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Subjt:  DDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

Sequences

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CDS sequence

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ATGGCGTTGCAAGATAAGCTAGACAGGTTCAAGAAACAGCAAGAACGGTGTCAGACTACCTTGACTGGCATTGCTGCATCCAAGTCTTCCTCCACACCCAAGTTTACGCC
TGCACCAGCTGCTCCCAATGGAAGACCTCCGGCTCCTGCTGTAAAGTTCTCAAATGATACCGAGAGACTTCAACATATTAACAGCATTAGGAAGTCTCCTGTTGGGGCTC
AGATCAAGCGGGTTATTGACCTGCTGCTGGAGACAAGGCTAGCCCATACACCAGAGCAAATCAATGAAGCGTGTTATGTTGATATAAATTCCAACAAAGCTGTTTTTGAT
AGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCGCATACAAGTCCAAGCATGATTTAAAGGATAAGAGTCAACTTCTGTACTTGATACGGAAATTTCC
AGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATACAACCGTTATGGAAGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTCGATTCAC
AAGAAGATATTGCATACCCAAACGATCCTAGAATTCAAATCAAGGTAGATGACGATCTGAAGATACTTTTTCGGGAGATTGAGTTACCTCGTGACATGCTCGACGTTGAG
AAGGATCTTCAAAAGAATGGGATGAAGCCTGCAACCAACACGGCCAAGAGGCGAGCCAACGCACAACATGTGGCATCCTCAAAGCCGAAGCCCAAGAAAAAGAAGCAAGA
GATCAGCAAGAGGACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAAT

mRNA sequence

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Protein sequence

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MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFD
SLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYTTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVE
KDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

MS012779 (gene) of Bitter gourd (TR) v1 genome