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MS012812 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS012812
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationscaffold63:3656508..3657342
RNA-Seq ExpressionMS012812
SyntenyMS012812
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577157.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]8.7e-2592.96Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_022136454.1 arabinogalactan peptide 22-like [Momordica charantia]1.7e-28100Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_022931316.1 arabinogalactan peptide 22-like [Cucurbita moschata]6.7e-2592.96Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_022985432.1 arabinogalactan peptide 20 [Cucurbita maxima]2.5e-2491.55Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLS+SF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_038882280.1 arabinogalactan protein 22-like [Benincasa hispida]1.1e-2490.14Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVS ASFGF+AAAALIFAIFLPVA PHSL PAPAP+SDGTSIDQGIAYVLM+VALALTYLIHNADLSN+F
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

TrEMBL top hitse value%identityAlignment
A0A0A0KZS8 Uncharacterized protein5.2e-2389.55Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADL
        MAVSR+SFG +AA ALIFAIFLPVAHPHSL PAPAP+SDGTSIDQGIAYVLM+VALALTYLIHNADL
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADL

A0A5D3CYF3 Arabinogalactan peptide 22-like3.3e-2285.71Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        MAVSR+SF  +AA ALIFAIFLPVAHP SL PAPAP+SDGTSIDQGIAYVLM+VALALTYLIHNADLSN+
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

A0A6J1C4C2 arabinogalactan peptide 22-like8.2e-29100Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

A0A6J1ETC6 arabinogalactan peptide 22-like3.2e-2592.96Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

A0A6J1J4V7 arabinogalactan peptide 201.2e-2491.55Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLS+SF
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.7e-1360.29Show/hide
Query:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        SR S    A  + +FA+ L +A   SL PAPAP+SDGTSIDQGIAY+LM+VAL LTYLIH  D S+S+
Subjt:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

Q8L9T8 Arabinogalactan protein 416.5e-1568.25Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH
        M+ SR  FG     ++IFAI LP+AH  S  PAPAP+SDGT+IDQGIAYVLMLVAL LTYLIH
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH

Q9FK16 Arabinogalactan protein 223.0e-1261.9Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH
        MA  +     +A   +I  I LP+A  HS  PAPAP+SDGTSIDQGIAYVLM+VALALTY IH
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH

Q9M373 Arabinogalactan protein 207.2e-1461.19Show/hide
Query:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        SR S   +A  A +FA+  P A   SL PAP+P+SDGTSIDQGIAY+LM+VAL LTYLIH  D S+S
Subjt:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.9e-1460.29Show/hide
Query:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        SR S    A  + +FA+ L +A   SL PAPAP+SDGTSIDQGIAY+LM+VAL LTYLIH  D S+S+
Subjt:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

AT3G61640.1 arabinogalactan protein 205.1e-1561.19Show/hide
Query:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        SR S   +A  A +FA+  P A   SL PAP+P+SDGTSIDQGIAY+LM+VAL LTYLIH  D S+S
Subjt:  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

AT5G24105.1 arabinogalactan protein 414.6e-1668.25Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH
        M+ SR  FG     ++IFAI LP+AH  S  PAPAP+SDGT+IDQGIAYVLMLVAL LTYLIH
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH

AT5G53250.1 arabinogalactan protein 222.2e-1361.9Show/hide
Query:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH
        MA  +     +A   +I  I LP+A  HS  PAPAP+SDGTSIDQGIAYVLM+VALALTY IH
Subjt:  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCTAGGGCTTCTTTTGGATTTGTGGCTGCCGCCGCCCTCATCTTCGCCATCTTCTTGCCGGTCGCCCACCCTCACTCCTTGCCTCCCGCACCCGCTCCCTC
CAGCGACGGGACATCCATAGATCAAGGAATAGCATATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAATGCAGACTTATCCAACAGCTTC
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTTCTAGGGCTTCTTTTGGATTTGTGGCTGCCGCCGCCCTCATCTTCGCCATCTTCTTGCCGGTCGCCCACCCTCACTCCTTGCCTCCCGCACCCGCTCCCTC
CAGCGACGGGACATCCATAGATCAAGGAATAGCATATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAATGCAGACTTATCCAACAGCTTC
Protein sequenceShow/hide protein sequence
MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF